CN185799

Overview
NameCN185799
Unique NameCN185799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig984 contig Csv1_Contig984:113..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185799 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = -2 
Query:  313 FDKSTRLYLASHKVYGGEARISALRRLFPLMEDKKSLASSEERAGVKGKASLLAALDYYVSMHSNIFISA--SPGNMHNALMGHRTYENLK-TIKPNMALLGQLFLNKSL-SWSEFQQAVVEGH-ENRQGQIRIRKPKQSIYTYPAPDCMC 750
            FD STR+YLA+ +++GGE  +   R LFP +++  S+  SEE +    +  + +A+DY V + S+IF+     P N  N L+GHR Y   + TI+P+   L  +F+ +     + F++AV     +   G    R   +S YT   P+C C
Sbjct:  325 FDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEELSAT-SQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSWPECFC 474
The following BLAST results are available for this feature:
BLAST of CN185799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH3.526e-1333.11DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185799 ID=CN185799; Name=CN185799; organism=Citrus sinensis; type=EST; length=754bp
GAGTGGTTTTTTTTTTTTTTGATGAAAAAAGACGTGTAATATTGAATGAT
CCTTTACAATGTAGGTCTGTTCGGCAAAAGCAACTCAATAACCTCTAAAA
GACCCAGAAGATGTTTACGGAACCAAGCCTGTCCCTGAATTATTTTCCAC
CTCCAATACACTTCACGAGCAATTACATACAAGATTGTACTAATAATAGG
TAAGGTGGGATGACTGCTTATTTATAGTACCAATACTGAAAGTCATAAAT
AAATGTGGAGCCAAATAGGCTCATAAAAAAAGCCACTCATATCCCTCAGC
ACCTTAACCGTGACACATGCAGTCAGGAGCAGGATACGTGTATATAGACT
GTTTTGGTTTTCTTATTCTAATCTGCCCTTGTCTGTTTTCGTGTCCTTCA
ACCACTGCCTGCTGAAACTCTGACCAACTAAGGCTTTTGTTCAAGAAGAG
TTGGCCCAGCAATGCCATGTTCGGCTTTATAGTCTTCAAGTTCTCATAAG
TTCGGTGTCCCATCAATGCATTGTGCATATTTCCTGGGGAAGCAGAGATG
AAAATGTTGCTGTGCATGCTAACATAGTAATCCAGTGCAGCTAACAATGA
AGCCTTTCCCTTAACCCCTGCTCTTTCTTCAGAAGAAGCAAGGCTCTTTT
TATCTTCCATTAGTGGAAACAATCTTCGTAAAGCAGAAATCCTAGCTTCT
CCACCATATACCTTGTGGGAGGCAAGATAAAGACGAGTACTCTTGTCAAA
CCCC
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