CN185761

Overview
NameCN185761
Unique NameCN185761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185761_ssr157 microsatellite CN185761_ssr157:157..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185761 vs. ExPASy Swiss-Prot
Match: COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 56/173 (32.37%), Postives = 82/173 (47.40%), Query Frame = -1 
Query:  195 PCSLLHNFFFSFPEIQNRAAKMMHMTFYWGRQVTLLFDFWRTDSWPSYALTLLACFLFSAFYQYLEDRRVRLNRIAVGQKPAIADVETPLLQRKVVGKFSAARIAG---TALFGINSGVGYLLMLAIMSFNGGVFLAVVVGLMIGYLV-----FRSESDD--VTLVVDNPCAC 683
            P S+++N   +     +    MMHMTF+WG+   +LF  W   S   YAL L+  F  +   ++L      L R + G                     SA R AG   TA++ +  G+ YL+MLA+MSFN GVFL  + G  +G+++     FR+ SDD     V  + CAC
Sbjct:   20 PSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSS--LLRGSTGD--------------------SANRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVPPSGCAC 170
The following BLAST results are available for this feature:
BLAST of CN185761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPT1_ARATH3.511e-1432.37Copper transporter 1 OS=Arabidopsis thaliana GN=CO... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185761 ID=CN185761; Name=CN185761; organism=Citrus sinensis; type=EST; length=686bp
CATCAGAAAAACAAGATTTTTATGTCTCCTTTCCCTTTCGTAATATCATT
TACAAATCAGTTTTACAACCTATAGCACAAAGATAAAAAGATACATGGCA
CAAAGCGACAGTATTACACAGAGAAATAAATTACCCAGAAACCCCAAACA
AAAAAAAGAGAGAGAGAGAGGGAGAGCCTTCGTAATCACTAAGCGCAAGC
ACAAGGATTATCAACAACAAGGGTGACATCATCACTTTCACTTCTAAAGA
CCAAGTAACCAATCATAAGCCCCACAACGACTGCCAAGAACACGCCCCCA
TTAAACGACATGATCGCCAGCATCAGCAAGTACCCCACCCCAGAATTGAT
CCCAAACAGGGCCGTCCCGGCGATCCTCGCCGCCGAGAATTTCCCGACGA
CTTTTCTCTGCAGCAGCGGGGTCTCGACGTCGGCGATGGCGGGCTTCTGT
CCGACGGCGATCCGGTTCAAGCGGACGCGCCTGTCCTCCAGGTACTGGTA
AAAGGCGGAGAAGAGGAAGCAGGCGAGAAGGGTCAGCGCGTAACTCGGCC
ATGAATCGGTACGCCAAAAGTCGAACAAGAGGGTCACTTGCCGGCCCCAG
TAGAAGGTCATGTGCATCATCTTCGCAGCTCGGTTTTGGATTTCAGGAAA
AGAAAAAAAAAAATTGTGGAGGAGAGAACAAGGCCT
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