DC888007

Overview
NameDC888007
Unique NameDC888007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC888007 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.624e-14
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  340 LKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 600
            L NMF+P  E +  +D EI+ DV EEC+K+G V HIYVDK SA G VY++  S  AA +A  A+H RWFA ++I+A ++    Y   F
Sbjct:  422 LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLF 509          
BLAST of DC888007 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.624e-14
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  340 LKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 600
            L NMF+P  E +  +D EI+ DV EEC+K+G V HIYVDK SA G VY++  S  AA +A  A+H RWFA ++I+A ++    Y   F
Sbjct:  428 LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLF 515          
BLAST of DC888007 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.624e-14
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  340 LKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 600
            L NMF+P  E +  +D EI+ DV EEC+K+G V HIYVDK SA G VY++  S  AA +A  A+H RWFA ++I+A ++    Y   F
Sbjct:  428 LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLF 515          
BLAST of DC888007 vs. ExPASy Swiss-Prot
Match: RSD1_SCHPO (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe GN=rsd1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = -2
Query:  340 LLKNMFDPAMETDPDFDLEIQGDVEEECS-KYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 603
            LL+NMF+PA ET P++  E++ DV+EEC  KYG+V HI V     G ++++FE+ + A  A   +H RWF  R I A  +   DY  KF
Sbjct:  510 LLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASILPETDYYFKF 598          
The following BLAST results are available for this feature:
BLAST of DC888007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RBM39_PONAB1.624e-1447.73RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE1.624e-1447.73RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN1.624e-1447.73RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RSD1_SCHPO2.771e-1443.82RNA-binding protein rsd1 OS=Schizosaccharomyces po... [more]
back to top
Properties
Property NameValue
Genbank descriptionDC888007 EIC Citrus sinensis cDNA clone EIC1245 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC888007 ID=DC888007; Name=DC888007; organism=Citrus sinensis; type=EST; length=604bp
TCGGCTTCACAGTTCACAGATGGTCATGGTATTTGAGATTCAAGATTACA
GCAAAACGTAAATTACAGAGACAGCCCAGTGAAGGGTGGAAAAAAAAATC
CTGTCATCATAGTTGAAATTGCATTGTATACAAATTTAGGTATAATAAAT
CTCCAGCATTGAACGCAGAACAGGAAGAGGGGCTGAGAATGCGGATCGGA
ATGAGGGGCTGAGAGGAAAGGGGAGATTGCCACACCAACATAGCACATGA
AAATTTAAAGTTACCAGCACCACCAAAAAAAATAGAAATAAAAATAAAAA
CCTCATCTCCATTTGAGCACCCATTCAAGTTTAGCTTTTGAACTTGGCCT
CGTAATCCTCTGGTTTCATAAAGATGGCTGATATCAGTCTCCGTGCAAAC
CATCTCATATGCATTGCACGTTGAGCACTAGCAGCTGCCTCCGTAGATTC
AAACCGTAGATATACAAAACCAGCACTCCTTTTATCCACATATATATGCT
TCACCCTGCCATATTTGGAACATTCTTCTTCCACATCTCCTTGTATTTCC
AGATCAAAATCTGGGTCCGTCTCCATGGCAGGATCAAACATATTCTTCAA
CAAC
back to top