DC887999

Overview
NameDC887999
Unique NameDC887999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig161 contig Csv1_Contig161:567..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887999 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.773e-17
Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = -2 
Query:  231 TMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHF 482
            TMAH+GEVK TVT+VI                 +           +DP+ILGGLVVEFGQKVFDMSI++RARQMERFLREP++F
Sbjct:  161 TMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREPLNF 244
[Close]
BLAST of DC887999 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.162e-12
Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = -2 
Query:  222 TMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL 482
            T AH+G+VKV VT+VI                 +           +DPSI GGL+VEF QKV DMSI++RA+QMER LREP+ F  L
Sbjct:  152 TNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238
The following BLAST results are available for this feature:
BLAST of DC887999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ATPO_IPOBA7.773e-1754.76ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH1.162e-1245.98ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionDC887999 EIC Citrus sinensis cDNA clone EIC1236 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887999 ID=DC887999; Name=DC887999; organism=Citrus sinensis; type=EST; length=483bp
AAACAAAAAATGTTGCCGTCCATCAGAACCATTTGCCATGAAAGCAAAGT
GATCAAGATGTGAATTTTATTTTGCCAATGATTCAATTCATTCAGAAATG
GCGGAGCACAAGCAAACAGCACCAAACAAAAGCATGAATGGTTCTTTTAC
TTCTTGGAGCGTTCCAGTTGTTGCATAATCATCTTGAAAATTTGGGCCCT
GGGGCTGTGGCAGCCTTTTTAGAGGGTGCCAAAATGAATGGGCTCACGTA
GGAACCTCTCCATCTGCCGCGCCCTAGACTTAATGGACATGTCAAACACC
TTTTGCCCAAACTCTACTACGAGCCCACCAAGAATGCTAGGATCAACCTT
CTGTTCAACCTTGACTTTCTTCCCTTGGCCAAGTGTCTCTTGCAGTGTCT
CTTTCAACTCTTTCTCTTCTTCTGGGGGAAGTGGAATAACGGATGTAACA
GTAACTTTTACTTCGCCCTTGTGTGCCATGGTT
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