CN185660

Overview
NameCN185660
Unique NameCN185660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:116..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.152e-33
Identity = 81/149 (54.36%), Postives = 94/149 (63.09%), Query Frame = -1
Query:  282 EAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR-----RFNPYMGYRGRRPYVPPY 710
            EAA LR MQ +++ E  A ++          KE  D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  AL LN S LH R LKV PKRTNVPGM + R R     R     GYRGR     PY
Sbjct:   27 EAAKLRAMQEQLDNETEALRN---------DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166          

HSP 2 Score: 23.0978 bits (48), Expect = 3.152e-33
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = -3
Query:  715 DDAVKELDEMKKRLKEME 768
            D   KEL EMK+R+ EME
Sbjct:    8 DTQEKELLEMKERVAEME 25          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 1.126e-30
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  303 KEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 713
            +EA  L+E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  127 EEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRSRYRAR 265          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.126e-30
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  303 KEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 713
            +EA  L+E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  122 EEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.471e-30
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  303 KEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 713
            +EA  L+E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  131 EEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.471e-30
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  303 KEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 713
            +EA  L+E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  131 EEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.471e-30
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  303 KEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 713
            +EA  L+E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  121 EEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 259          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.279e-30
Identity = 71/141 (50.35%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  303 KEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 713
            +EA  L+E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  122 EEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 71/169 (42.01%), Postives = 97/169 (57.40%), Query Frame = -1
Query:  282 KEAAALREMQAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP----------------------RRFNPYMGYRGRRPYVPPY 713
            +EA  +++MQ++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+                           R     MGYRGR  Y  PY
Sbjct:   56 EEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.596e-27
Identity = 71/170 (41.76%), Postives = 98/170 (57.65%), Query Frame = -1
Query:  282 KEAAALREMQAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK--------QYRPR---------------RFNPYMGYRGRRPYVPPY 713
            +EA  +++MQ++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+          +R R                     GYRGR  Y  PY
Sbjct:   56 EEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANYYAPY 225          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = -1
Query:  282 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 617
            K+E D RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:   87 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
The following BLAST results are available for this feature:
BLAST of CN185660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PAB2_SCHPO3.152e-3354.36Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
PABP2_MOUSE1.126e-3051.06Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PAB2A_XENLA1.126e-3051.06Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PABP2_HUMAN1.471e-3051.06Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN1.471e-3051.06Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2B_XENLA1.471e-3051.06Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR4.279e-3050.35Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
PABP2_DROME4.005e-2842.01Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
PABP2_DROPS2.596e-2741.76Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
EPA2B_XENLA5.413e-2549.58Embryonic polyadenylate-binding protein 2-B OS=Xen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185660 ID=CN185660; Name=CN185660; organism=Citrus sinensis; type=EST; length=773bp
TTTTTTTTTTTTTTTTTCCAATTCAACAAGAAATTCCCTTTAGTTCATGC
TAATAATGTTTGATCATTCAAGACATCAATAATAAACATGTAGCTAATAA
ATCCTTTGTTTCCTATCTAAAGCAGGATACATAAGCACCATGATACATTG
AATTTTTCAGTTTATGGATGATCCACAAATGTCACCATCTTCAACAGGAG
CACAATCTGCTAGTAGTAGGGCATGTACCTCATTGGCCTTCTGAACCTCG
GAACCTTCCCATATCCATAAGGTGAATAGAAATAAGGAGGTACATAGGGC
CTCCTGCCTCGGTACCCCATGTAAGGATTGAAACGCCTTGGACGATACTG
CTTCATACCAGGGACATTTGTCCTCTTAGGTAAAACCTTCAGTTGACGGC
CATGTAATTCAGACTCATTCAACTGGAGAGCCTCTTGAACAGCATCTATT
TCAAGGAATTCCACATAAGCAAAACCCTTTGGCTGGCCAAACTTGTCTGT
CAAAATAGTTACCCTGTTTACAGTACCACAGGATTGGAAATGTTGCTGCA
CTTCTTCAGGAGTGCATGCATAATCTACATTGCCAACAAAGACTGATCGT
GAATCTGCCTCTTCTTTGCTTGCTTGATTAGCAGCCACATTAGCAGGATC
TTGAGCAGCGCCCATCTCTTTCTCGACCTTAGCTTGCATCTCACGAAGAG
CAGCAGCTTCCTTCCTCCATCTCCTTCAACCGCTTCTTCATCTCATCCAG
CTCCTTGACGGCGTCGTCATCGG
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