CN185659

Overview
NameCN185659
Unique NameCN185659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1708 contig Csv1_Contig1708:16..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185659 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 2.242e-96
Identity = 173/214 (80.84%), Postives = 192/214 (89.72%), Query Frame = 2
Query:   59 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLT 700
            MVKGPGLYS+IGKKARDLLY+DY SDHKFTVTTY++ GVAIT+SG+KKGELFLADVSTQLKNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VPDQ+SGKVELQY HEYAGI+T IG TA+P+            ALGTDLSFDTATGNFTKCNAGLS++  DLIASL LNDKGDT++ASYYH V P+TNTAVGAELTHSFSSNENTLT
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLT 214          
BLAST of CN185659 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 5.914e-89
Identity = 159/214 (74.30%), Postives = 182/214 (85.05%), Query Frame = 2
Query:   59 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLT 700
            M KGPGLY+EIGKKARDLLYKDYQSDHKF++TTY+  GV ITSSG KKG+LFLADV+TQLKNKN+TTD+KVDTNSNLFTTITVDE APGLK+I SF VPDQRSGK+E+QY H+YAGI T +G TANPI            ALGTD+SFDT TG+FTKCNAGLS+T+ DL+ASL LN+KGD L ASYYH VSPLT+TAVGAE+ HSFS+NEN +T
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIIT 214          
BLAST of CN185659 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.253e-80
Identity = 145/214 (67.76%), Postives = 171/214 (79.91%), Query Frame = 2
Query:   59 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLT 700
            MVKGPGLY++IGKKARDLLYKDY SD KFT++TY+  GVAITSSG KKGELFL DV+TQLKNKNITTD+KVDTNSNLFTTITV+EPAPG+K+I SF VP+Q SGKVELQY HEYAGIS+ +G  ANPI            A G D+SFDT  G  TK NA +++   DLI SLTLN+KGD L+ASYYH ++PL+NTAVG +++H FS+ ENT T
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFT 214          
BLAST of CN185659 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 290.041 bits (741), Expect = 8.012e-78
Identity = 145/214 (67.76%), Postives = 170/214 (79.44%), Query Frame = 2
Query:   59 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLT 700
            MVKGPGLY+EIGKKARDLLYKD+ SD KF++TT++ AGVAITS+G KKG+L L DV+ Q + KNITTD+KV T+S    T TVDE APGL+SIFSF VPDQ SGKVELQY HEYAGIST +G T NP             A+GTD+SFDT +GNFTK NAGLS+T  DLIASLT+NDKGD LNASYYHIV+PL NTAVGAE++H  SS ++T+T
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTIT 214          
BLAST of CN185659 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 280.796 bits (717), Expect = 4.861e-75
Identity = 139/211 (65.88%), Postives = 168/211 (79.62%), Query Frame = 2
Query:   68 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLT 700
            GPGLY EIGKKARDLLY+DYQ+DHKFT+TTYTS GVAIT++  KK +L   ++ +Q+KNKNIT DVK +++SN+ TT+TVDE  PGLKSI SF VPDQRSGK ELQY H+YAG+S  IG TA+P+            A+G D+S DTATGN TK NAGLS+++ DLIASL LN+KGD+L ASYYHIV+  + TAVGAELTHSFSSNEN+LT
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNH-SATAVGAELTHSFSSNENSLT 212          
BLAST of CN185659 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.496e-71
Identity = 136/212 (64.15%), Postives = 165/212 (77.83%), Query Frame = 2
Query:   68 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLT 700
            GPGLYS IGKKA+DLLY+DYQ+DHKFT+TTYT+ G AIT++  KK +L + ++ +Q+KNKNIT DVK ++ SN+ TTIT D+  APGLK+I SF VPDQ+SGKVELQY H+YAGI+  IG TANP+            A+G D+S DTAT NF K NA LSYT+ DLIASL LN+KGD+L ASYYHIV   + TAVGAELTHSFSSNEN+LT
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEK-SGTAVGAELTHSFSSNENSLT 213          
BLAST of CN185659 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 266.544 bits (680), Expect = 9.486e-71
Identity = 131/214 (61.21%), Postives = 163/214 (76.17%), Query Frame = 2
Query:   59 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLT 700
            MVKGPGLY+EIGKKARDLLY+DYQ D KF+VTTY+S GVAIT++G  KG LFL DV+TQ+KN N T DVKV T+S+L TT+T DEPAPGLK I    +PD +SGK E+QY H+YAGIST +GFTA PI            +LGTD++++T +GNF   NAG ++T  DL ASL LNDKG+ LNASYY IVSP  +T VGAE++H+F++ EN +T
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSP--STVVGAEISHNFTTKENAIT 212          
BLAST of CN185659 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.342e-61
Identity = 120/214 (56.07%), Postives = 152/214 (71.03%), Query Frame = 2
Query:   59 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTL 697
            MV   GLY++IGKK RDLLYKDY +  KF +TT +  GVAIT++G +K E    ++ TQ+KNK +T DVK ++ S+L TTITVDE   PGLKSI + +VPDQRSGK+E QY HEYAG++  +G  +NP+            ++G D+SFDTAT +FTK NA LS T  DLIASL LN+ GDTL ASYYH+V   + TAVGAEL+HS S NE+TL
Sbjct:    1 MVVAVGLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTL 214          
BLAST of CN185659 vs. ExPASy Swiss-Prot
Match: VDAC2_XENLA (Voltage-dependent anion-selective channel protein 2 OS=Xenopus laevis GN=vdac2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 65/218 (29.82%), Postives = 93/218 (42.66%), Query Frame = 2
Query:   71 PGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIV---PDQRSGKVELQYQHEYAGISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT 694
            P  Y+++GK ARD+  K Y     K  V T ++ GV  T+SG    +    + S + K K     +T   K +T++ L T I + D+ A GLK  F         ++SGKV+  Y+ EY  +   + F  A P               G  ++FD+A    TK N  + Y   D      +ND G     S Y  VS    TAV    T   S N +T
Sbjct:    3 PPSYADLGKSARDIFNKGYGFGLVKLDVKTKSATGVEFTTSGTSNTDSGKVNGSLETKYKWGEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKVKAAYKQEYVNLGCDVDFDFAGPAIHGSAVVGYEGWLAGYQMTFDSAKSKLTKNNFAVGYKTGDFQLHTNVND-GSEFAGSIYQKVSDKMETAVNLAWT---SGNNST 216          
The following BLAST results are available for this feature:
BLAST of CN185659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
VDAC2_SOLTU2.242e-9680.84Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU5.914e-8974.30Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA2.253e-8067.76Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ARATH8.012e-7867.76Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ4.861e-7565.88Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT2.496e-7164.15Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC2_ARATH9.486e-7161.21Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC_MAIZE2.342e-6156.07Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC2_XENLA5.849e-1229.82Voltage-dependent anion-selective channel protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185659 ID=CN185659; Name=CN185659; organism=Citrus sinensis; type=EST; length=701bp
AGGAAATAATCAAAACTGATATTTCTCAGCGTTTCCTTTCCATTTTCTCT
GGAGAATCATGGTGAAAGGCCCCGGGCTCTACTCTGAAATCGGCAAGAAA
GCCCGAGATCTTCTCTACAAGGACTACCAGAGCGACCACAAGTTCACTGT
CACTACTTACACGTCAGCTGGAGTCGCGATAACTTCGAGTGGTGTTAAGA
AAGGTGAGCTTTTTTTGGCTGATGTCAGCACTCAGTTGAAGAACAAGAAC
ATCACTACTGATGTTAAAGTTGATACTAACTCTAATCTTTTTACAACCAT
CACTGTCGATGAGCCTGCTCCTGGACTCAAGTCAATCTTTAGCTTTATCG
TTCCTGATCAGAGATCTGGCAAGGTGGAACTCCAATATCAGCATGAATAT
GCTGGAATAAGCACTGGCATTGGATTCACTGCAAATCCCATTGTTAACTT
TTCTGGTGTGGTTGGAAACAATTCTGTTGCTCTTGGGACTGATCTCTCAT
TTGATACTGCCACTGGCAACTTCACCAAGTGCAATGCGGGGCTGAGCTAT
ACACATATTGACCTCATTGCTTCCCTGACATTGAATGACAAAGGTGACAC
CCTTAATGCTTCCTACTACCACATTGTAAGCCCACTGACCAATACCGCTG
TTGGGGCGGAGCTGACCCATAGCTTTTCAAGCAACGAGAACACTCTGACA
A
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