CN185655

Overview
NameCN185655
Unique NameCN185655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185655_ssr552 microsatellite CN185655_ssr552:552..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4757 contig Csv1_Contig4757:316..1080. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185655 vs. ExPASy Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.579e-61
Identity = 124/222 (55.86%), Postives = 155/222 (69.82%), Query Frame = 2
Query:   20 AGSLQTLRLPRSEMSDSIVDQIAGRLSAVTILDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCTLLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYE-INDWDD-CSDY-SDGSEYLAWEFLAXXXXXXXXXXXXXXXXWDDEGRXXXXXXRFYDGIEEDAGIYGWPPSP 676
            AGSL+TL++PRS +++S V  +A +LS++T LDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  FP++KVLGP V+ +Y+ INDW+D CSDY SDGS+YLAWEF                  ++DE         + +    D   + WPPSP
Sbjct:  105 AGSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFF---------EDGVMGEFYEDEFEHGWDDNFYAENAVLDMEPHIWPPSP 317          
BLAST of CN185655 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 50/141 (35.46%), Postives = 80/141 (56.74%), Query Frame = 2
Query:   20 AGSLQTLRLPR-SEMSDSIVDQIAGRLSAVTILDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCTLLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 439
            + +L++LRL R S+++D    +   +L  +  L+LSYCS     +L  +G+ C  +  L  N HP     +   DD+A AIA TMPKL+ L++  + +S   +  IL +C+ LE LDLR C++V L     K  F ++KV+
Sbjct:  114 SSNLRSLRLIRCSQITDDGFVEAVVKLP-LEELELSYCS-FSVESLRVVGQCCLNMKTLKLNKHP-----QKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVV 247          
The following BLAST results are available for this feature:
BLAST of CN185655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBW2_ARATH3.579e-6155.86F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2... [more]
SKI19_ARATH1.167e-1135.46F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185655 ID=CN185655; Name=CN185655; organism=Citrus sinensis; type=EST; length=767bp
GAGGCCTGGTTCTGCAAGTGCTGGTTCCCTTCAGACATTGCGACTTCCAA
GAAGTGAAATGAGTGACTCCATAGTGGATCAGATAGCTGGAAGGCTGTCT
GCCGTCACGATCTTGGATTTGAGCTATTGCAGTAAAATTGGTGCTCCTGC
TTTGGAGGCCATAGGAAAACACTGTAAATTGCTTGTGGTTCTATGCCGAA
ACATGCACCCATTAGATACAGCTGACAAGCTCTCACAAGATGACGAGGCC
AATGCCATTGCCTCAACGATGCCAAAACTTAAGCGACTTGAGATGGCTTA
CCATGTTATCAGCACAGAAATTGTTCTTAAGATCCTTTCAAGCTGTACCC
TGCTAGAGTTTTTGGATTTGAGAGGGTGCTGGGATGTGAAACTTGACGAC
AAGTTCATGAAAGGGAACTTCCCAAACTTGAAGGTTCTGGGGCCCTTTGT
GATGGACTACTATGAAATAAATGACTGGGATGATTGCTCGGATTATTCAG
ATGGATCCGAGTATTTGGCCTGGGAATTCCTAGCTGGTGAAATGGGTGAC
TATGATGATGATGATGAAATCTACGAGGGAATGTGGGATGATGAAGGCAG
GCTGGAAGAGCTTGAGCTAAGGTTCTATGATGGAATCGAAGAGGATGCAG
GTATCTATGGTTGGCCTCCATCACCTTAGGCTCTGTAATTCCTTGTCAAC
TTTGTTTTCGTTTTCTAGCATCTTTTTCTCGTTGGGAGCTTCTTCTTTAT
GCTGGAGTTGCTATGTT
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