CN185530

Overview
NameCN185530
Unique NameCN185530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7030 contig Csv1_Contig7030:33..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185530 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 269.626 bits (688), Expect = 1.333e-71
Identity = 129/168 (76.79%), Postives = 146/168 (86.90%), Query Frame = 2 
Query:   71 MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVQELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 574
            MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPEPIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEA              IA+VQE+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct:    1 MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
The following BLAST results are available for this feature:
BLAST of CN185530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH1.333e-7176.79ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185530 ID=CN185530; Name=CN185530; organism=Citrus sinensis; type=EST; length=778bp
GAGGGTTTGGGAGCTGAGAAAATCAAAAAATTAAGAGAAAAGAAAAAGGG
AAAATCAGTCGAGAGAGAAAATGAGCGGAGCTGGCAAGAAAATAGCTGAC
GTCGCATTCAAGGCCGGAAGGACCATAGATTGGGAAGGGATGGCGAAGAT
GCTGGTCTCCGATGAGGCACGCAAGGAGTTCGCCACTCTCCGTCGCGCTT
TCGACGAAGTCAACTCCACTCTTCAGACCAAGTTCAGCCAGGAACCTGAA
CCTATTGACTGGGAGTATTACAGAAAAGGAATTGGCTCTCGCTTGGTGGA
CATGTACAAACAGGCTTATGAAAGCATAGAGGTCCCAAAGTATGTAGACA
AAGTCACCCCTGAATACAAATCTAAGTTTGATGCTTTGCTGGTGGAATTG
AAAGAAGCAGAAGGGAAATCTCTTAAGGAGTCCGAGCGTTTGGAGAAAGA
AATAGCTGAGGTTCAAGAACTGAAGGAAAAGATCAGCACCATGACCGCTG
AGGAATACTTTGAAAAGCATCCGGAGCTCAAAAAGAAGTTCGATGATGAA
ATCAGGAATGACTACTGGGGCTATTGATCACACATTTGCTCAATTTAGCA
GCTGCATTTCCTAGCTCGGCCAAGATTTTCTGAAGTTGCCCTGTTTTCCC
AGCTTGTTAAATAATAATGATCATTCGAATTGTTTTTGCATAAACCTGTT
GCTCATGGTTTCAAAAATTTGAGCTTTGATCACATCTATGCTAAACATTC
AGTTTTCGTGGCAATGCATACATTTTAA
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