DC887906

Overview
NameDC887906
Unique NameDC887906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887906 vs. ExPASy Swiss-Prot
Match: HEM11_CUCSA (Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.801e-55
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = -3
Query:  270 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGXDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 623
            EESKQF AWRDSLETVPTIKKLRAYAERIR AEL+KCLSKMGDDI KKTRRAVDDLSRGIVNKLLHGPMQHLRCDG DSRTL ETLENMHALNRMF LET+ ++ EQK+RAK+EQNQK
Sbjct:  435 EESKQFEAWRDSLETVPTIKKLRAYAERIRTAELEKCLSKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEIAVLEQKIRAKVEQNQK 552          
BLAST of DC887906 vs. ExPASy Swiss-Prot
Match: HEM11_ARATH (Glutamyl-tRNA reductase 1, chloroplastic OS=Arabidopsis thaliana GN=HEMA1 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 3.642e-49
Identity = 96/118 (81.36%), Postives = 105/118 (88.98%), Query Frame = -3
Query:  270 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGXDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 623
            EES QF AWRDSLETVPTIKKLRAYAERIRVAEL+KC+SKMGDDI+KKT RAVDDLSRGIVN+ LHGPMQHLRCDG DSRTL ETLENMHALNRM+GLE D  + E+K++A  EQ QK
Sbjct:  428 EESTQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCMSKMGDDINKKTTRAVDDLSRGIVNRFLHGPMQHLRCDGSDSRTLSETLENMHALNRMYGLEKD--ILEEKLKAMAEQQQK 543          
BLAST of DC887906 vs. ExPASy Swiss-Prot
Match: HEM12_CUCSA (Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumis sativus GN=HEMA2 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.692e-46
Identity = 88/118 (74.58%), Postives = 101/118 (85.59%), Query Frame = -3
Query:  270 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGXDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 623
            EE  +F AWRDSLETVPTIKK RAY ERIR AELDKCLSKMG+DI KK + A++DLS GI NKLLHGP+QHLRCDG DSRTLDE L+NMHA+NRMF LETD S+ E+K+RAK+E+ QK
Sbjct:  425 EEINKFEAWRDSLETVPTIKKFRAYVERIRAAELDKCLSKMGEDIPKKKKVAINDLSLGIANKLLHGPIQHLRCDGNDSRTLDEILQNMHAINRMFDLETDLSVLEEKIRAKVERGQK 542          
BLAST of DC887906 vs. ExPASy Swiss-Prot
Match: HEM12_HORVU (Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vulgare GN=HEMA2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.432e-45
Identity = 84/118 (71.19%), Postives = 107/118 (90.68%), Query Frame = -3
Query:  273 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGXDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 623
            +E K+F AWRDSLETVPTIKKLR+YA+RIR +ELDKCL K+G+D ++KKTRR++++LS GIVNKLLHGP+QHLRCDG DSRTLDETL+NMHALNRMF L+T+ ++ EQK++AK+E+ Q
Sbjct:  347 QELKRFEAWRDSLETVPTIKKLRSYADRIRASELDKCLQKIGEDNLNKKTRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLDNMHALNRMFNLDTEKAVLEQKIKAKVEKTQ 464          
BLAST of DC887906 vs. ExPASy Swiss-Prot
Match: HEM1_ORYSJ (Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os10g0502400 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.442e-45
Identity = 83/118 (70.34%), Postives = 107/118 (90.68%), Query Frame = -3
Query:  273 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGXDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 623
            +E K+F AWRDSLETVPTIKKLR+YA+RIR +EL+KCL K+G+D ++KK RR++++LS GIVNKLLHGP+QHLRCDG DSRTLDETLENMHALNRMF L+T+ ++ EQK++AK+E++Q
Sbjct:  419 QELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDALTKKMRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLENMHALNRMFSLDTEKAIIEQKIKAKVEKSQ 536          
BLAST of DC887906 vs. ExPASy Swiss-Prot
Match: HEM1_ORYSI (Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_033071 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 5.442e-45
Identity = 83/118 (70.34%), Postives = 107/118 (90.68%), Query Frame = -3
Query:  273 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGXDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 623
            +E K+F AWRDSLETVPTIKKLR+YA+RIR +EL+KCL K+G+D ++KK RR++++LS GIVNKLLHGP+QHLRCDG DSRTLDETLENMHALNRMF L+T+ ++ EQK++AK+E++Q
Sbjct:  419 QELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDSLTKKMRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLENMHALNRMFSLDTEKAIIEQKIKAKVEKSQ 536          
BLAST of DC887906 vs. ExPASy Swiss-Prot
Match: HEM11_HORVU (Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeum vulgare GN=HEMA1 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.283e-45
Identity = 83/118 (70.34%), Postives = 106/118 (89.83%), Query Frame = -3
Query:  273 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGXDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 623
            +E K+F AWRDSLETVPTIKKLR+YA+RIR +EL+KCL K+G+D ++KK RR++++LS GIVNKLLHGP+QHLRCDG DSRTLDETLENMHALNRMF L+T+ ++ EQK++AK+E+ Q
Sbjct:  409 QELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDNLNKKMRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLENMHALNRMFSLDTEKAVLEQKIKAKVEKTQ 526          
BLAST of DC887906 vs. ExPASy Swiss-Prot
Match: HEM13_HORVU (Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeum vulgare GN=HEMA3 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.607e-44
Identity = 80/118 (67.80%), Postives = 105/118 (88.98%), Query Frame = -3
Query:  273 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGXDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 623
            EE K+F AWRDS+ETVPTIKKLR+YA+R+R +ELDKCL K+G+D ++KK RR+++ LS GIVN+LLHGP+QHLRCDG D+RTLDETLENMHALNRMFGL+T+ ++ EQK++ K+E+ +
Sbjct:  415 EELKRFEAWRDSMETVPTIKKLRSYADRVRASELDKCLQKIGEDALTKKMRRSIEQLSTGIVNRLLHGPLQHLRCDGTDNRTLDETLENMHALNRMFGLDTEKAVMEQKIKTKVEKQK 532          
BLAST of DC887906 vs. ExPASy Swiss-Prot
Match: HEM12_ARATH (Glutamyl-tRNA reductase 2, chloroplastic OS=Arabidopsis thaliana GN=HEMA2 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.650e-41
Identity = 82/115 (71.30%), Postives = 95/115 (82.61%), Query Frame = -3
Query:  279 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGXDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQ 623
            +ESK F AWRDSLETVPTIKKLR Y ERI  AE++K L KMG D++KK R+ VDDL RGIVNKLLHGPMQHLRCDG DSRTL ETL+NM ALNRM+GL  D  + E+K+RAK+E+
Sbjct:  417 DESKHFEAWRDSLETVPTIKKLRGYTERIIAAEIEKSLPKMGIDMNKKMRKTVDDLIRGIVNKLLHGPMQHLRCDGNDSRTLSETLDNMQALNRMYGL--DAEILEEKIRAKVEK 529          
BLAST of DC887906 vs. ExPASy Swiss-Prot
Match: HEM1_SYNS9 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9902) GN=hemA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.270e-17
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = -3
Query:  327 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGXDSRTLDETLENMHALNRMFGLE 623
            +E++QF  W DSLE VPTI +LR+  E IR  EL K LS+MG D S + R+ V+ LS+GI+NK+LH P+  LR     S+   E  + + A+ R+F L+
Sbjct:  336 DEAQQFLDWWDSLEAVPTINQLRSSMETIRTEELQKALSRMGPDFSARERKVVEALSKGIINKILHTPVTKLRA----SQARSERQQALRAVERLFDLD 430          
The following BLAST results are available for this feature:
BLAST of DC887906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HEM11_CUCSA5.801e-5588.14Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumi... [more]
HEM11_ARATH3.642e-4981.36Glutamyl-tRNA reductase 1, chloroplastic OS=Arabid... [more]
HEM12_CUCSA1.692e-4674.58Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumi... [more]
HEM12_HORVU1.432e-4571.19Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vu... [more]
HEM1_ORYSJ5.442e-4570.34Glutamyl-tRNA reductase, chloroplastic OS=Oryza sa... [more]
HEM1_ORYSI5.442e-4570.34Glutamyl-tRNA reductase, chloroplastic OS=Oryza sa... [more]
HEM11_HORVU9.283e-4570.34Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeu... [more]
HEM13_HORVU4.607e-4467.80Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeu... [more]
HEM12_ARATH3.650e-4171.30Glutamyl-tRNA reductase 2, chloroplastic OS=Arabid... [more]
HEM1_SYNS96.270e-1745.45Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionDC887906 EIC Citrus sinensis cDNA clone EIC1091 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887906 ID=DC887906; Name=DC887906; organism=Citrus sinensis; type=EST; length=625bp
CATGGATTTATAGTGGTTTCATCGGTACAAGGATCAGGCTCACCTCTATC
CTAGGAGGTTGGAAGGCACCCAAATGAGAGTTAGGAAAAAAGTGTCTTAT
AACAACACTTGACGAATTGAATGATCCCACATAGGGATCTACACTGTTAT
ACTATTCAAATGAAGAATACAGCAATGCCGAGACTCACAACAAGGTGAGG
ACGTTTTCCTCTTATTCAATTGAGGAAGTGAATGAAGTGCCATTGACAAA
CTGGTATTCAAAAAGCTCACTTCTGGTTTTGTTCTATCTTGGCTCGAACC
TTTTGCTCGAAAAGAGATGTATCTGTTTCAAGGCCAAACATTCTGTTTAG
AGCATGCATGTTCTCAAGGGTCTCGTCTAGAGTCCTGCTGTCNCTCCCAT
CACATCTCAAGTGCTGCATTGGACCATGAAGAAGCTTATTCACGATACCA
CGGCTAAGGTCATCGACAGCCCTCCTTGTTTTCTTTGAGATATCATCACC
CATCTTTGATAGGCATTTATCTAACTCTGCCACCCTGATTCTCTCAGCAT
AAGCTCTCAATTTCTTAATAGTAGGAACAGTCTCCAATGAATCCCTCCAA
GCTGCAAACTGTTTTGATTCCTCAA
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