DC887902

Overview
NameDC887902
Unique NameDC887902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887902 vs. ExPASy Swiss-Prot
Match: PIN1_ARATH (Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 50/62 (80.65%), Postives = 59/62 (95.16%), Query Frame = -2
Query:  205 AKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 390
            A F+EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT
Sbjct:   57 ANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 118          
BLAST of DC887902 vs. ExPASy Swiss-Prot
Match: PIN1_MALDO (Peptidyl-prolyl cis-trans isomerase 1 OS=Malus domestica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.235e-23
Identity = 49/63 (77.78%), Postives = 58/63 (92.06%), Query Frame = -2
Query:  202 AKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 390
            AKFD++A+R SDCSSAKRGGDLG FGR QMQKPFEEAT+ LK+GE+S++VDTDSGVH+I RTG
Sbjct:   59 AKFDDLAARYSDCSSAKRGGDLGPFGRNQMQKPFEEATFALKVGEMSDIVDTDSGVHIIKRTG 121          
BLAST of DC887902 vs. ExPASy Swiss-Prot
Match: PIN1_DIGLA (Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis lanata GN=PARV12.8 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = -2
Query:  202 AKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 390
            A F ++ASR S CSSAKRGGDLG FGRGQMQKPFEEAT+ LK+GEIS++VDTDSGVH+I RTG
Sbjct:   56 ASFSDLASRHSHCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIKRTG 118          
BLAST of DC887902 vs. ExPASy Swiss-Prot
Match: PIN1_RHIOR (Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizopus oryzae GN=pin1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.126e-17
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = -2
Query:  205 VASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 375
            +A+  SDC+SAKRGGDLG F RGQMQKPFEEAT+ L++GE+S+ V TDSGVHLI+RT
Sbjct:   93 LATNYSDCTSAKRGGDLGYFERGQMQKPFEEATFALQVGELSKPVWTDSGVHLILRT 149          
BLAST of DC887902 vs. ExPASy Swiss-Prot
Match: DOD_DROME (Protein dodo OS=Drosophila melanogaster GN=dod PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.333e-17
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = -2
Query:  208 AKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 390
            A FDE+A   SDCSSAKRGGDLG FGRGQMQ  FE+A + L + ++S +VD+DSG+H+I+R
Sbjct:  104 ATFDELARSYSDCSSAKRGGDLGKFGRGQMQAAFEDAAFKLNVNQLSGIVDSDSGLHIILR 164          
BLAST of DC887902 vs. ExPASy Swiss-Prot
Match: PIN1_MOUSE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Mus musculus GN=Pin1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.700e-16
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = -2
Query:  205 FDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 384
            F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:  105 FESLASQFSDCSSAKARGDLGPFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 164          
BLAST of DC887902 vs. ExPASy Swiss-Prot
Match: PIN1_MACFA (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Macaca fascicularis GN=PIN1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.700e-16
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = -2
Query:  205 FDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 384
            F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:  103 FESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of DC887902 vs. ExPASy Swiss-Prot
Match: PIN1_HUMAN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Homo sapiens GN=PIN1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.700e-16
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = -2
Query:  205 FDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 384
            F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:  103 FESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of DC887902 vs. ExPASy Swiss-Prot
Match: PIN1_BOVIN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Bos taurus GN=PIN1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.700e-16
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = -2
Query:  205 FDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 384
            F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:  103 FESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of DC887902 vs. ExPASy Swiss-Prot
Match: ESS1_YEAST (Peptidyl-prolyl cis-trans isomerase ESS1 OS=Saccharomyces cerevisiae GN=ESS1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.313e-15
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = -2
Query:  202 FDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 384
            F+ +A   SDCSS KRGGDLG FGRG+MQ  FE+A + LK+GE+S++V++ SGVH+I R G
Sbjct:  110 FEALAKERSDCSSYKRGGDLGWFGRGEMQPSFEDAAFQLKVGEVSDIVESGSGVHVIKRVG 170          
The following BLAST results are available for this feature:
BLAST of DC887902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIN1_ARATH4.504e-2480.65Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidops... [more]
PIN1_MALDO2.235e-2377.78Peptidyl-prolyl cis-trans isomerase 1 OS=Malus dom... [more]
PIN1_DIGLA1.892e-2277.78Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis... [more]
PIN1_RHIOR3.126e-1771.93Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizop... [more]
DOD_DROME5.333e-1762.30Protein dodo OS=Drosophila melanogaster GN=dod PE=... [more]
PIN1_MOUSE7.700e-1663.33Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_MACFA7.700e-1663.33Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_HUMAN7.700e-1663.33Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_BOVIN7.700e-1663.33Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
ESS1_YEAST1.313e-1559.02Peptidyl-prolyl cis-trans isomerase ESS1 OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionDC887902 EIC Citrus sinensis cDNA clone EIC1082 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887902 ID=DC887902; Name=DC887902; organism=Citrus sinensis; type=EST; length=391bp
CCCAAACCACAATCAGCCATGTATAAACTACATGCTTTAAGAAAACANCT
CCNACGAGCCAAATATAGCATGGCTCGCCAGCATTNTCATAAGAAGACCA
ACATTCATCTGAAGTAAAACCAACGACAACATTCTTGAATATGTTTCCAG
AATATACTGAACAAATCAGTTAATCCATTATGAGCTTATCATTAATAATC
AACCAGTCCTCATGATAAGGTGAACCCCACTATCAGTATCCACAACTTCA
CTTATCTCACCAATTTTAAGATTATATGTTGCCTCCTCAAAAGGCTTCTG
CATCTGGCCTCGACCAAAATTACCGAGATCACCGCCGCGTTTGGCGGAGC
TGCAATCGGAGAGGCGAGAGGCGACTTCATCGAACTTGGCC
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