DC887897

Overview
NameDC887897
Unique NameDC887897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 3.677e-55
Identity = 108/119 (90.76%), Postives = 112/119 (94.12%), Query Frame = -1
Query:  209 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 565
            IK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVR CLEHA+SVAKTFLMSDCVVVEIKEPEP +P GNPMDNSGYGY
Sbjct:  483 IKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP-VPVGNPMDNSGYGY 600          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.825e-54
Identity = 109/118 (92.37%), Postives = 110/118 (93.22%), Query Frame = -1
Query:  212 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 565
            IK+TL NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLSSDN KYGYNAATG YEDLMAAGIIDPTKVVR CLEHASSVAKTFLMSDCVVVEIKEPE A P GNPMDNSGYG
Sbjct:  477 IKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPESA-PVGNPMDNSGYG 593          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.221e-51
Identity = 100/119 (84.03%), Postives = 110/119 (92.44%), Query Frame = -1
Query:  209 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 565
            IK+TL+NDE+KVGA+IV+RALCYPLKLIAKNAGVNGSVV+EKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVR CLEHA+SVAKTFL SD VVVEIKEPE A P  NPMDNSG+GY
Sbjct:  382 IKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPE-AAPLANPMDNSGFGY 499          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.161e-47
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = -1
Query:  254 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEP 565
            IK  LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVR CLEHA+SVAKTFLMSDCVVVEIKEPEP
Sbjct:  483 IKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP 586          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBC_CHLRE (RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.814e-33
Identity = 75/112 (66.96%), Postives = 88/112 (78.57%), Query Frame = -1
Query:  239 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 565
            IKETL N+E+K+GADI+KRAL YP+KLIA NAG NGSVV ++V+ + D   YGYNAAT  +EDLM AGIIDPTKVVR  LE+A SVAKTFL++D VV EI  KE  PA  AG
Sbjct:  144 IKETLSNEEQKMGADIIKRALSYPIKLIANNAGTNGSVVMQRVMDNIDQPYYGYNAATDTFEDLMEAGIIDPTKVVRCSLENAVSVAKTFLLADVVVTEIPEKEKAPAPAAG 255          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.556e-29
Identity = 68/120 (56.67%), Postives = 90/120 (75.00%), Query Frame = -1
Query:  209 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 565
            IK  + + E+++GADI+KRALCYP+KLIA+NAGVNGSVV  +V+ + D   YGYNAAT ++E+LM  GIIDP+KVVR  +E+A SVAKTFL++D VV E+KE E A    NP+     G+
Sbjct:  313 IKRRMTDPEQQMGADIIKRALCYPIKLIAQNAGVNGSVVMNEVMKNLDRPHYGYNAATDSFENLMETGIIDPSKVVRCSMENAVSVAKTFLLADVVVTELKEIE-AGAKPNPVAPGAAGF 431          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.965e-25
Identity = 61/116 (52.59%), Postives = 79/116 (68.10%), Query Frame = -1
Query:  218 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 565
            ++ +L   +EK+G +IV RAL  PL+ IA NAG  GSVV EK+   D   +GYNA TG YEDL+A+GI+DP KVVR  L+ A+SVA   L ++ +VV+  EPEPAMPAG  M   G
Sbjct:  428 LQASLTVADEKLGVEIVARALEAPLRQIADNAGAEGSVVVEKLRDKD-FNFGYNALTGQYEDLVASGILDPAKVVRSALQDAASVASLILTTEVLVVDQPEPEPAMPAGGDMGGMG 542          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH601_GLUDA (60 kDa chaperonin 1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.834e-25
Identity = 57/111 (51.35%), Postives = 83/111 (74.77%), Query Frame = -1
Query:  218 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSG 547
            ND+++VGA+I+++AL  PL+ IA NAG +G+V++ KVL S+++ YG++A  G+Y+DL+AAGIIDPTKVVR  L+ ASSVA   + ++ +V E  E + PAMPAG  M   G
Sbjct:  433 NDDQRVGAEIIRKALQAPLRQIAHNAGEDGAVIAGKVLESNDYNYGFDAQIGDYKDLVAAGIIDPTKVVRTALQDASSVAGLLITTEAMVAEKPEKKAPAMPAGGGMGGMG 543          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.154e-24
Identity = 61/109 (55.96%), Postives = 77/109 (70.64%), Query Frame = -1
Query:  218 DEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 544
            +EEK+GADIVKRAL  PL+ IA NAG  GSV+  +V  SD    GYNAATG +EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  E +PA+PA   M   G
Sbjct:  433 EEEKIGADIVKRALEAPLRQIADNAGEEGSVIVSRVKDSD-FNVGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKPAVPADPGMGGMG 540          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.507e-24
Identity = 64/116 (55.17%), Postives = 81/116 (69.83%), Query Frame = -1
Query:  218 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 565
            IK+  D +EEK+GADIVKRAL  PL+ IA NAGV GSV+  +V  SD +  GYNAATG +EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  E + A PA   M   G
Sbjct:  427 IKKNFD-EEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNT-GYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKAAAPADAGMGGMG 540          
The following BLAST results are available for this feature:
BLAST of DC887897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_ARATH3.677e-5590.76RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA1.825e-5492.37RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE3.221e-5184.03RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA2.161e-4791.35RuBisCO large subunit-binding protein subunit beta... [more]
RUBC_CHLRE8.814e-3366.96RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_CHLRE1.556e-2956.67RuBisCO large subunit-binding protein subunit beta... [more]
CH602_SYNP63.965e-2552.5960 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH601_GLUDA8.834e-2551.3560 kDa chaperonin 1 OS=Gluconacetobacter diazotrop... [more]
CH602_ANASL1.154e-2455.9660 kDa chaperonin 2 OS=Anabaena sp. (strain L31) G... [more]
CH602_ANAVT1.507e-2455.1760 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]

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Properties
Property NameValue
Genbank descriptionDC887897 EIC Citrus sinensis cDNA clone EIC1072 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887897 ID=DC887897; Name=DC887897; organism=Citrus sinensis; type=EST; length=565bp
AGAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAGAATCCATAAACTCTACTAAGTCNAGTAAT
TGAATTTACAAGAAGAAGAGAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAANTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAGTATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCANCATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAGATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAAT
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