DC887897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3) HSP 1 Score: 214.157 bits (544), Expect = 3.677e-55 Identity = 108/119 (90.76%), Postives = 112/119 (94.12%), Query Frame = -1 Query: 209 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 565 IK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVR CLEHA+SVAKTFLMSDCVVVEIKEPEP +P GNPMDNSGYGY Sbjct: 483 IKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP-VPVGNPMDNSGYGY 600
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 211.846 bits (538), Expect = 1.825e-54 Identity = 109/118 (92.37%), Postives = 110/118 (93.22%), Query Frame = -1 Query: 212 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 565 IK+TL NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLSSDN KYGYNAATG YEDLMAAGIIDPTKVVR CLEHASSVAKTFLMSDCVVVEIKEPE A P GNPMDNSGYG Sbjct: 477 IKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPESA-PVGNPMDNSGYG 593
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.221e-51 Identity = 100/119 (84.03%), Postives = 110/119 (92.44%), Query Frame = -1 Query: 209 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 565 IK+TL+NDE+KVGA+IV+RALCYPLKLIAKNAGVNGSVV+EKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVR CLEHA+SVAKTFL SD VVVEIKEPE A P NPMDNSG+GY Sbjct: 382 IKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPE-AAPLANPMDNSGFGY 499
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.161e-47 Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = -1 Query: 254 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEP 565 IK LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVR CLEHA+SVAKTFLMSDCVVVEIKEPEP Sbjct: 483 IKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP 586
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBC_CHLRE (RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 8.814e-33 Identity = 75/112 (66.96%), Postives = 88/112 (78.57%), Query Frame = -1 Query: 239 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 565 IKETL N+E+K+GADI+KRAL YP+KLIA NAG NGSVV ++V+ + D YGYNAAT +EDLM AGIIDPTKVVR LE+A SVAKTFL++D VV EI KE PA AG Sbjct: 144 IKETLSNEEQKMGADIIKRALSYPIKLIANNAGTNGSVVMQRVMDNIDQPYYGYNAATDTFEDLMEAGIIDPTKVVRCSLENAVSVAKTFLLADVVVTEIPEKEKAPAPAAG 255
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.556e-29 Identity = 68/120 (56.67%), Postives = 90/120 (75.00%), Query Frame = -1 Query: 209 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 565 IK + + E+++GADI+KRALCYP+KLIA+NAGVNGSVV +V+ + D YGYNAAT ++E+LM GIIDP+KVVR +E+A SVAKTFL++D VV E+KE E A NP+ G+ Sbjct: 313 IKRRMTDPEQQMGADIIKRALCYPIKLIAQNAGVNGSVVMNEVMKNLDRPHYGYNAATDSFENLMETGIIDPSKVVRCSMENAVSVAKTFLLADVVVTELKEIE-AGAKPNPVAPGAAGF 431
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.965e-25 Identity = 61/116 (52.59%), Postives = 79/116 (68.10%), Query Frame = -1 Query: 218 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 565 ++ +L +EK+G +IV RAL PL+ IA NAG GSVV EK+ D +GYNA TG YEDL+A+GI+DP KVVR L+ A+SVA L ++ +VV+ EPEPAMPAG M G Sbjct: 428 LQASLTVADEKLGVEIVARALEAPLRQIADNAGAEGSVVVEKLRDKD-FNFGYNALTGQYEDLVASGILDPAKVVRSALQDAASVASLILTTEVLVVDQPEPEPAMPAGGDMGGMG 542
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH601_GLUDA (60 kDa chaperonin 1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 8.834e-25 Identity = 57/111 (51.35%), Postives = 83/111 (74.77%), Query Frame = -1 Query: 218 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSG 547 ND+++VGA+I+++AL PL+ IA NAG +G+V++ KVL S+++ YG++A G+Y+DL+AAGIIDPTKVVR L+ ASSVA + ++ +V E E + PAMPAG M G Sbjct: 433 NDDQRVGAEIIRKALQAPLRQIAHNAGEDGAVIAGKVLESNDYNYGFDAQIGDYKDLVAAGIIDPTKVVRTALQDASSVAGLLITTEAMVAEKPEKKAPAMPAGGGMGGMG 543
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.154e-24 Identity = 61/109 (55.96%), Postives = 77/109 (70.64%), Query Frame = -1 Query: 218 DEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 544 +EEK+GADIVKRAL PL+ IA NAG GSV+ +V SD GYNAATG +EDL+AAGIIDP KVVR L++A+S+A L ++ +VVE E +PA+PA M G Sbjct: 433 EEEKIGADIVKRALEAPLRQIADNAGEEGSVIVSRVKDSD-FNVGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKPAVPADPGMGGMG 540
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 1.507e-24 Identity = 64/116 (55.17%), Postives = 81/116 (69.83%), Query Frame = -1 Query: 218 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 565 IK+ D +EEK+GADIVKRAL PL+ IA NAGV GSV+ +V SD + GYNAATG +EDL+AAGIIDP KVVR L++A+S+A L ++ +VVE E + A PA M G Sbjct: 427 IKKNFD-EEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNT-GYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKAAAPADAGMGGMG 540 The following BLAST results are available for this feature:
BLAST of DC887897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887897 ID=DC887897; Name=DC887897; organism=Citrus sinensis; type=EST; length=565bpback to top |