DC887871

Overview
NameDC887871
Unique NameDC887871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9461 contig Csv1_Contig9461:150..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.473e-55
Identity = 101/123 (82.11%), Postives = 115/123 (93.50%), Query Frame = -1
Query:  251 LGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 619
            LGE MDLMTALQ+V++KS AH GL +GL E AK IEKHAAQLCVLAEDC+QPDYVKLVKALCA+HNV L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GEES+GLN+VQQ++KS
Sbjct:   20 LGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142          
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.189e-51
Identity = 94/127 (74.02%), Postives = 112/127 (88.19%), Query Frame = -1
Query:  248 AAPLGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKSH 628
            AA + E MD+ TAL++ +RKS A+GG+ RGLHE AK+IEK  AQLCVLAEDCNQPDYVKLVKALCADH++ LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGEE+  LN+V++H+ S+
Sbjct:   18 AAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144          
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.493e-50
Identity = 96/125 (76.80%), Postives = 108/125 (86.40%), Query Frame = -1
Query:  251 APLGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 625
            A + E MDLMTAL++ LRK+ A+GG+ RGLHE AK+IEK  AQL VLAEDCNQPDYVKLVKALCADH V LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGEE+  L++V +HI S
Sbjct:   19 AAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143          
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37
Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = -1
Query:  254 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 616
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37
Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = -1
Query:  254 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 616
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37
Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = -1
Query:  254 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 616
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37
Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = -1
Query:  254 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 616
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_ORENI (40S ribosomal protein S12 OS=Oreochromis niloticus GN=rps12 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.500e-37
Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = -1
Query:  251 APLGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 625
            +P G  MD+ TAL  VL+ +L H GLA G+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ KS
Sbjct:    6 SPAGGVMDVNTALPEVLKTALIHDGLAPGIREAAKALDKRQAHLCVLAANCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKS 130          
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.265e-37
Identity = 73/125 (58.40%), Postives = 96/125 (76.80%), Query Frame = -1
Query:  254 AAPLGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 628
            AAP G  MD+MTAL+ VL+K++   GL RGLHE AK +++ +AQLCVLA + N+P Y +LV+ALCA+H ++L+ VP  K LGEW GLCKID EGKARKVVGCSC V+  FGEES+   V+ +++K
Sbjct:   11 AAPSG-TMDVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLK 134          
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.621e-36
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = -1
Query:  254 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 616
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+  ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEPQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
The following BLAST results are available for this feature:
BLAST of DC887871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_HORVU3.473e-5582.1140S ribosomal protein S12 OS=Hordeum vulgare GN=RP... [more]
RS122_ARATH5.189e-5174.0240S ribosomal protein S12-2 OS=Arabidopsis thalian... [more]
RS121_ARATH7.493e-5076.8040S ribosomal protein S12-1 OS=Arabidopsis thalian... [more]
RS12_PIG1.122e-3759.5040S ribosomal protein S12 OS=Sus scrofa GN=RPS12 P... [more]
RS12_HUMAN1.122e-3759.5040S ribosomal protein S12 OS=Homo sapiens GN=RPS12... [more]
RS12_CHICK1.122e-3759.5040S ribosomal protein S12 OS=Gallus gallus GN=RPS1... [more]
RS12_BOVIN1.122e-3759.5040S ribosomal protein S12 OS=Bos taurus GN=RPS12 P... [more]
RS12_ORENI2.500e-3757.6040S ribosomal protein S12 OS=Oreochromis niloticus... [more]
RS12_CYAPA4.265e-3758.4040S ribosomal protein S12 OS=Cyanophora paradoxa G... [more]
RS12_XENLA1.621e-3658.6840S ribosomal protein S12 OS=Xenopus laevis GN=rps... [more]

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Properties
Property NameValue
Genbank descriptionDC887871 EIC Citrus sinensis cDNA clone EIC1025 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887871 ID=DC887871; Name=DC887871; organism=Citrus sinensis; type=EST; length=628bp
TTTCTATTTGGCTCAAAACCACAAAAGAGTTTCACTTTGAAAAAGATTCA
ATCCAGCAAAAATATAGAAAAGGATTGATGTTTTCAGTTGCAATAAAGGA
TTGAGGAACAAAAGTACTAAAAGTAATAGCAACTAACGAACACAAAATCT
CCTTGGAGTGAGACAACCAAACACAATTTGACAAAAAAAAGACAAGGCTC
TCTCTATAAATATAAAAGTTGAACTACGAATCCATCACTGCTACTCAGTG
AGACTTGATGTGCTGCTGAACAACGTTAAGACCATCGCTTTCCTCTCCGA
AATCCTTCACAACAACACAGGAACAACCCACAACCTTCCTGGCCTTTCCC
TCTGAGTCAATCTTGCACAAACCAGCCCACTCGCCGAGGGTCTTGGCACT
GGGAACCGTCAACAAGCTTACGTTATGGTCAGCACAGAGTGCCTTGACCA
ATTTCACATAGTCAGGTTGGTTACAATCTTCAGCCAATACACAGAGCTGG
GCAGCATGCTTTTCAATCACTTTGGCACCTTCATGAAGGCCACGAGCAAG
ACCACCGTGAGCAAGTGATTTTCTCAACACAACCTGCAAAGCCGTCATCA
GATCCATTGCCTCACCAAGGGGGGCAGC
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