DC887871
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 3.473e-55 Identity = 101/123 (82.11%), Postives = 115/123 (93.50%), Query Frame = -1 Query: 251 LGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 619 LGE MDLMTALQ+V++KS AH GL +GL E AK IEKHAAQLCVLAEDC+QPDYVKLVKALCA+HNV L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GEES+GLN+VQQ++KS Sbjct: 20 LGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 5.189e-51 Identity = 94/127 (74.02%), Postives = 112/127 (88.19%), Query Frame = -1 Query: 248 AAPLGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKSH 628 AA + E MD+ TAL++ +RKS A+GG+ RGLHE AK+IEK AQLCVLAEDCNQPDYVKLVKALCADH++ LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGEE+ LN+V++H+ S+ Sbjct: 18 AAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 7.493e-50 Identity = 96/125 (76.80%), Postives = 108/125 (86.40%), Query Frame = -1 Query: 251 APLGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 625 A + E MDLMTAL++ LRK+ A+GG+ RGLHE AK+IEK AQL VLAEDCNQPDYVKLVKALCADH V LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGEE+ L++V +HI S Sbjct: 19 AAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37 Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = -1 Query: 254 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 616 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3) HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37 Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = -1 Query: 254 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 616 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37 Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = -1 Query: 254 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 616 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37 Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = -1 Query: 254 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 616 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_ORENI (40S ribosomal protein S12 OS=Oreochromis niloticus GN=rps12 PE=2 SV=3) HSP 1 Score: 155.221 bits (391), Expect = 2.500e-37 Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = -1 Query: 251 APLGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 625 +P G MD+ TAL VL+ +L H GLA G+ E AK ++K A LCVLA +C++P YVKLV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ KS Sbjct: 6 SPAGGVMDVNTALPEVLKTALIHDGLAPGIREAAKALDKRQAHLCVLAANCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKS 130
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 4.265e-37 Identity = 73/125 (58.40%), Postives = 96/125 (76.80%), Query Frame = -1 Query: 254 AAPLGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 628 AAP G MD+MTAL+ VL+K++ GL RGLHE AK +++ +AQLCVLA + N+P Y +LV+ALCA+H ++L+ VP K LGEW GLCKID EGKARKVVGCSC V+ FGEES+ V+ +++K Sbjct: 11 AAPSG-TMDVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLK 134
BLAST of DC887871 vs. ExPASy Swiss-Prot
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 1.621e-36 Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = -1 Query: 254 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 616 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+ALCA+ ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEPQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129 The following BLAST results are available for this feature:
BLAST of DC887871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887871 ID=DC887871; Name=DC887871; organism=Citrus sinensis; type=EST; length=628bpback to top |