CN185414

Overview
NameCN185414
Unique NameCN185414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9626 contig Csv1_Contig9626:170..976. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185414 vs. ExPASy Swiss-Prot
Match: VSP55_ARATH (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.183e-25
Identity = 51/91 (56.04%), Postives = 70/91 (76.92%), Query Frame = -1 
Query:  118 ACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVM 390
            ACA++NNWWPMLS +MYVL+PMP LFFGG  +  L +     WI+AAKFLTGASAVGS+AIP IL+HA +I  GA+ ++ +S+ +F+  ++
Sbjct:   34 ACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124
The following BLAST results are available for this feature:
BLAST of CN185414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
VSP55_ARATH1.183e-2556.04Vacuolar protein sorting-associated protein 55 hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001E21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185414 ID=CN185414; Name=CN185414; organism=Citrus sinensis; type=EST; length=807bp
CCCTCTTTTTTTGGTGAGAAACGTAACTTGGTATTTGAGCAGTCACATCC
ATTTGCACTTTCAGTGAATGTTCCACATGAATCACCAGTCATCTTCCAGG
CTAGCTCGGTGAAAACACATGACAGTGCAGACAAATATGAAGAATGATGT
GAATTCTATGAACATAGCACCTGTCTCAATCATATGTGCATGTCTAAGAA
TGATGGGAATGGCGAGGCTCCCCACAGCTGATGCTCCGGTCAAGAATTTA
GCAGCATCTATCCAACCTCCACCATCCCTGCTTGTCAGAAACTGAGTAGA
TCCACCTCCAAAGAACAAACAAGGCATAGGCACCAGCACATACATGAGAG
CTGATAACATTGGCCACCAATTGTTGTAAATTGCACAAGCCTACACTCCA
CAGAATGATAAAAATGAAAAAAATAAAAGGTTAAACCAAAACAAAATTAA
AGGTTAAAAGATAAAATGGAACATGCAAAGCATAGATTCCATCTTAATTT
TCATTCTTGTTCTACCAATCTTCCACAATTGGGAATTGTATAATTCACAC
TAGGAGAGTTGCAAATAATAAAACCACCCTTCAAATGCAAAAATGCAACT
TTCATTGTGTACAAAACAAGGAATTCTCAATTTTCTTTCCCTAAATATAT
CTTCTGAAAAGGTGCAACATTTTCCTATTGCTCACGTACTCCAAAAAGTG
TCAACATCTCACAAAAGCATCAAGAGGATGCAATCCAAGTATTCAAGGAG
CATATATTTAGCATGATCATATCCAGTAATTGATCAAAATATATAAGTAC
ATAATTT
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