DC887847

Overview
NameDC887847
Unique NameDC887847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3893 contig Csv1_Contig3893:100..511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887847 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.273e-26
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = -1
Query:    8 LLLFVSPSLASESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXLID-SQIDIKFQRNVDKATICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVGDLHPDKNSDN 412
            LLL +  + A E +H YQ  E V LW+N VGPY+N QETY Y+SLPFC  S      +            ++ S +DIKF+ +V  AT C +DLD+ K   F  AI+N+YW++ ++DDLP+WG VG+   D+N ++
Sbjct:   19 LLLLLPRTRADEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPATYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGE--ADENGED 152          
BLAST of DC887847 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.251e-26
Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = -1
Query:    8 LLLFVSPSLASESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXLID-SQIDIKFQRNVDKATICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVGDLHPDKNSDN 412
            LLL +  + + E +H YQ  E V LW+N VGPY+N QETY Y+SLPFC  S      +            ++ S +DIKF+ +V   T C +DLD+ K   F  AI+N+YW++ ++DDLP+WG VG+   D+N ++
Sbjct:   17 LLLLLPRARSDEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPGTYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGE--ADENGED 150          
BLAST of DC887847 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.539e-23
Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = -1
Query:   38 LLLFVSPSLASESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXLIDSQIDIKFQRNVDKATICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVG 412
            LLL        E    Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK            + +S  +I+F+ NV+K  +C + L  A+V+Q + AIE  Y+FEF +DDLP+ GFVG
Sbjct:   20 LLLLTGREPGVEGVTHYKAGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRVLCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVG 143          
BLAST of DC887847 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.457e-22
Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = -1
Query:   38 LLLFVSPSLASESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXLIDSQIDIKFQRNVDKATICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVG 412
            LLL +      E    Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK            + +S  +I+F+ NV+K  +C + L  A+V+Q + AIE  Y+FEF +DDLP+ GFVG
Sbjct:   20 LLLGIGHGPRVEGVTHYKPGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVG 143          
BLAST of DC887847 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.484e-22
Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = -1
Query:   38 LLLFVSPSLASESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXLIDSQIDIKFQRNVDKATICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVG 412
            LLL        E    Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK            + +S  +I+F+ NV+K  +C + L  A+V+Q + AIE  Y+FEF +DDLP+ GFVG
Sbjct:   20 LLLGTGHGPGVEGVTHYKAGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVG 143          
BLAST of DC887847 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.484e-22
Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = -1
Query:   38 LLLFVSPSLASESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXLIDSQIDIKFQRNVDKATICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVG 412
            LLL +      E    Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK            + +S  +I+F+ NV+K  +C + L  A+V+Q + AIE  Y+FEF +DDLP+ GFVG
Sbjct:   20 LLLGIGHGPWVEGVTHYKPGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVG 143          
BLAST of DC887847 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.484e-22
Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = -1
Query:   38 LLLFVSPSLASESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXLIDSQIDIKFQRNVDKATICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVG 412
            LLL        E    Y+  +PV L+VNKVGPY+NPQETY+YY LP C       HK            + +S  +I+F+ NV+K  +C + L  A+V+Q + AIE  Y+FEF +DDLP+ GFVG
Sbjct:   20 LLLGTGHGPGVEGVTHYKAGDPVILYVNKVGPYHNPQETYHYYQLPVC-CPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVG 143          
BLAST of DC887847 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.842e-15
Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = -1
Query:   38 SESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWXXXXXXXXXXXLIDSQIDIKFQRNVDKATICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVG 382
            S + H +++++ V  +VN VGPY+NP ETY +Y+LPFC  S + ++K             + S     F+ + +   +C   L +  +++FK AI   Y+ E   DDLP++ FVG
Sbjct:   23 SSNKHHFKENDEVPFYVNNVGPYSNPTETYEFYTLPFCKPS-SISYKKTKLGEILQGDSAVLSDYQFPFKSSFENKQLCEYTLKKEDIEKFKKAIGEYYYAEMIYDDLPIFSFVG 136          
The following BLAST results are available for this feature:
BLAST of DC887847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TM9S3_HUMAN1.273e-2642.65Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
TM9S3_MOUSE8.251e-2641.18Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
TM9S1_BOVIN8.539e-2343.20Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TM9S1_RAT1.457e-2243.20Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S1_PONAB2.484e-2243.20Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_MOUSE2.484e-2243.20Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_HUMAN2.484e-2243.20Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
PHG1B_DICDI3.842e-1533.04Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
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Properties
Property NameValue
Genbank descriptionDC887847 EIC Citrus sinensis cDNA clone EIC0991 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887847 ID=DC887847; Name=DC887847; organism=Citrus sinensis; type=EST; length=412bp
GCTTCCCATTATCACTGTTCTTATCAGGATGCAGATCACCAACAAAGCCC
CATAAAGGCAGATCATCCAAGAAGAATTCAAACCAATAATTGTTCTCAAT
TGCATCTTTGAATTGTTTGACCTTTGCCTCATCAAGATCCAATGAACAGA
TGGTGGCTTTGTCCACATTCCTTTGGAACTTTATGTCTATTTGACTGTCA
ATAAGTTCATTTCCACCCAGGACCTCACCAAGACCGCCCCATTTGTGCGC
AGGATTGCCAGATGCATGGCAAAATGGAAGACTGTAATAGTTGTAAGTTT
CTTGTGGATTGTTATACGGGCCAACCTTATTTACCCATAGGGTAACAGGT
TCATCTTGTTGATACTTGTGATCTGACTCGGAGGCTAGAGAAGGGGAGAC
GAAGAGCAGGAG
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