DC887837

Overview
NameDC887837
Unique NameDC887837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8865 contig Csv1_Contig8865:90..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887837 vs. ExPASy Swiss-Prot
Match: CYC3_ARATH (Probable cytochrome c At4g10040 OS=Arabidopsis thaliana GN=At4g10040 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.982e-59
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = -2 
Query:  221 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 553
            ASFDEAPPGN KAGEKIF+TKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK+MAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+ TA
Sbjct:    2 ASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112
[Close]
BLAST of DC887837 vs. ExPASy Swiss-Prot
Match: CYC_ABUTH (Cytochrome c OS=Abutilon theophrasti PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 6.793e-59
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = -2 
Query:  221 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 553
            ASF +APPG+AKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNW E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ASFQZAPPGBAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZSTA 111
[Close]
BLAST of DC887837 vs. ExPASy Swiss-Prot
Match: CYC_CUCMA (Cytochrome c OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.581e-58
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = -2 
Query:  221 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 553
            ASFDEAPPGN+KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111
[Close]
BLAST of DC887837 vs. ExPASy Swiss-Prot
Match: CYC_SAMNI (Cytochrome c OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.751e-58
Identity = 106/111 (95.50%), Postives = 107/111 (96.40%), Query Frame = -2 
Query:  221 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 553
            ASF EAPPGN KAGEKIFKTKC QCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA
Sbjct:    1 ASFAEAPPGNPKAGEKIFKTKCNQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111
[Close]
BLAST of DC887837 vs. ExPASy Swiss-Prot
Match: CYC_BRAOL (Cytochrome c OS=Brassica oleracea PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 9.809e-58
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = -2 
Query:  221 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 553
            ASFDEAPPGN+KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111
[Close]
BLAST of DC887837 vs. ExPASy Swiss-Prot
Match: CYC_BRANA (Cytochrome c OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 9.809e-58
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = -2 
Query:  221 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 553
            ASFDEAPPGN+KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111
[Close]
BLAST of DC887837 vs. ExPASy Swiss-Prot
Match: CYC_PHAAU (Cytochrome c OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.281e-57
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = -2 
Query:  221 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 553
            ASFDEAPPGN+K+GEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYS ANKNMAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111
[Close]
BLAST of DC887837 vs. ExPASy Swiss-Prot
Match: CYC2_ARATH (Probable cytochrome c At1g22840 OS=Arabidopsis thaliana GN=At1g22840 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.727e-57
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = -2 
Query:  221 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 553
            ASFDEAPPGNAKAGEKIF+TKCAQCHTVE GAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AV WEEK LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    2 ASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
[Close]
BLAST of DC887837 vs. ExPASy Swiss-Prot
Match: CYC_RICCO (Cytochrome c OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 6.358e-57
Identity = 101/111 (90.99%), Postives = 106/111 (95.50%), Query Frame = -2 
Query:  221 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 553
            ASF++APPG+ KAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:    1 ASFBZAPPGBVKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVQWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZATA 111
[Close]
BLAST of DC887837 vs. ExPASy Swiss-Prot
Match: CYC_GOSBA (Cytochrome c OS=Gossypium barbadense PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 6.358e-57
Identity = 102/111 (91.89%), Postives = 106/111 (95.50%), Query Frame = -2 
Query:  221 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 553
            ASF +APPG+AKAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ASFQZAPPGBAKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVQWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZSTA 111
The following BLAST results are available for this feature:
BLAST of DC887837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CYC3_ARATH3.982e-5995.50Probable cytochrome c At4g10040 OS=Arabidopsis tha... [more]
CYC_ABUTH6.793e-5994.59Cytochrome c OS=Abutilon theophrasti PE=1 SV=1[more]
CYC_CUCMA2.581e-5894.59Cytochrome c OS=Cucurbita maxima PE=1 SV=1[more]
CYC_SAMNI5.751e-5895.50Cytochrome c OS=Sambucus nigra PE=1 SV=1[more]
CYC_BRAOL9.809e-5893.69Cytochrome c OS=Brassica oleracea PE=1 SV=1[more]
CYC_BRANA9.809e-5893.69Cytochrome c OS=Brassica napus PE=1 SV=1[more]
CYC_PHAAU1.281e-5793.69Cytochrome c OS=Phaseolus aureus PE=1 SV=1[more]
CYC2_ARATH3.727e-5793.69Probable cytochrome c At1g22840 OS=Arabidopsis tha... [more]
CYC_RICCO6.358e-5790.99Cytochrome c OS=Ricinus communis PE=1 SV=1[more]
CYC_GOSBA6.358e-5791.89Cytochrome c OS=Gossypium barbadense PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887837 EIC Citrus sinensis cDNA clone EIC0973 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887837 ID=DC887837; Name=DC887837; organism=Citrus sinensis; type=EST; length=554bp
CAAATCTGAATATGATTATAACCAGGAAATTCAATTGAATATTATGTTTG
CCAATGACAGCAACCTTTTCTCAAATTAGCAATGCTCAAGTTACAAAGAA
CATTGCTGAACCTTAAATGTTTAAAATTTATTGGTAAAAAACAGTACTAT
ATCCGCACCGCAAAACAATCCTCAACAACTGCAAAATGGAATAGGTAAAC
TGACTATCGGCAAGTTCTTATGCAGTAGATTGTTTCAAATATGCAATAAG
GTCGGCACGATCCTGAGGCTTCTTCAATCCAGGGAATACCATCTTTGTTC
CAGGAATGTACTTCTTAGGGTTGAGCAAGTAATCATACAAAGTCTTTTCC
TCCCAATTCACAGCCATGTTCTTGTTAGCCGCAGAGTATGAGTACCCAGG
TGTAGTCCCCGATTGCCTTCCAAACAATCCGTTCAAATTAGGACCTTGTT
TGTGACCGGCGCCTTTCTCGACGGTGTGGCACTGAGCGCACTTGGTCTTG
AAGATCTTCTCTCCGGCCTTTGCATTGCCGGGAGGTGCCTCATCAAACGA
CGCC
back to top