CN185359

Overview
NameCN185359
Unique NameCN185359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185359_ssr385 microsatellite CN185359_ssr385:385..399. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10604 contig Csv1_Contig10604:320..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185359 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.418e-63
Identity = 132/234 (56.41%), Postives = 153/234 (65.38%), Query Frame = 2
Query:    5 KLSVLFPAIPLALIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAA---ASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFF---XXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEF 688
            KL++LF AIPLA++   + +  P +F LSL+GLTPLAERVSFLTEQ+AFYTGPTVGGLLNATCGNATELIIAI AL   K+ VVKY                  F GGIAN+R+EQ++DRKQADVN                 KYAA    S+ +  K +L LSR SSIVMLI YIAYL+FQLWTHR+ F                  TPVIGFWSGFAWLVGMT +IALLSE+
Sbjct:   74 KLTLLFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQADVNFFLLLMGLLCHLLPLLLKYAATGEVSTSMINKMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQLFEAQQDDDDAYDDEVSVEETPVIGFWSGFAWLVGMTIVIALLSEY 307          
BLAST of CN185359 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 1.568e-62
Identity = 130/232 (56.03%), Postives = 150/232 (64.66%), Query Frame = 2
Query:    5 KLSVLFPAIPLALIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKY---AAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFF-XXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEF 688
            KL++LFPAIP A+I    G ++PW+F LSLLGLTPLAERVSFLTEQ+AFYTGPT+GGLLNATCGNATELIIAI AL   K+ VVKY                  FCGGIAN+R+EQ++DRKQADVN                  Y     AS+ + +   L +SR  SIVMLI YIAYLVFQLWTHR+ F                T VI FWSGFAWLVGMT +IALLSE+
Sbjct:   74 KLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAVLSDMQLSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQEDEYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEY 305          
BLAST of CN185359 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.193e-56
Identity = 121/233 (51.93%), Postives = 143/233 (61.37%), Query Frame = 2
Query:    5 KLSVLFPAIPLALIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAAS-----SDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFXXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEF 688
            KL+VLFPA+PLA+  QCF F + WVFALSLLGL PLAERVSFLTEQIA YTGPTVGGLLNATCGNATELIIA+FAL + KI+VVK                   FCGG+ NL   Q YDR Q+DV++                +YA A+     S  +A A+L LSRA S VML  Y+AYL FQL THR+ F                P +GF S   WL  MTA+I++LSE+
Sbjct:   65 KLAVLFPAVPLAIAAQCFRFDQVWVFALSLLGLIPLAERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVLSNLLLVLGTSLFCGGVVNLGARQPYDRNQSDVSTALLFLAVLCHSAPLLLRYAVAAGEHSVSATSAAASLDLSRACSFVMLASYVAYLFFQLKTHRQLFEPQEVDGGDAGDDDEEPALGFASALFWLALMTAVISVLSEY 297          
BLAST of CN185359 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.145e-47
Identity = 112/235 (47.66%), Postives = 132/235 (56.17%), Query Frame = 2
Query:    5 KLSVLFPAIPLALIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSD---ITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFXXXXXXXXXXXXXXXT----PVIGFWSGFAWLVGMTAIIALLSEF 688
            +L +LFPA+ LA+      F + WVF LSL+GL PLAER+SFLTEQIAFYTGPTVGGLLNAT GN TE+IIA+ AL E KI+VVK                   F  GIANLR  Q YD KQA VN+                +YA  S D   ++  A L LSRA SI+MLI Y+AYL FQL THR+ F                    PV+GF S   WL  MT + ALLS +
Sbjct:   73 RLFLLFPAVLLAIAATYLHFGQVWVFVLSLIGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQPYDTKQAHVNTALLMLAVLCHSLPLMLRYAVTSGDHAIVSGDAALHLSRACSILMLIAYLAYLFFQLNTHRQLFEPQQVEDDDDDDLVIAQDDEPVLGFSSAMIWLALMTLLTALLSGY 307          
BLAST of CN185359 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.057e-46
Identity = 104/239 (43.51%), Postives = 136/239 (56.90%), Query Frame = 2
Query:    5 KLSVLFPAIPLALIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWT-----------HREFFXXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEF 688
            KL +LFPA+PLA++   +     WVFALSLLGLTPLAER+SFLTEQIAF+TGPTVGGL+NATCGNATE+IIAI A+ +RK+ +VK                   F GGI+NLRK Q +D +Q D+NS                ++   + +      + LSRASS VMLI Y+A+L+F L++            RE                   VIG WS   WL+ MT ++ALLS++
Sbjct:   75 KLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQRE----DVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDY 309          
BLAST of CN185359 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.439e-41
Identity = 94/232 (40.52%), Postives = 128/232 (55.17%), Query Frame = 2
Query:    5 KLSVLFPAIPLALIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSD-ITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFXXXXXXXXXXXXXXXT---PVIGFWSGFAWLVGMTAIIALLSEF 688
            KL  LF A+PLA+  +       WVFA SL+GL PLAERVSFL+E IA   GPT GG++NATCGN  ELIIA+FAL++ K++++K+                    GGI N+ KE+  D++QADV+                 KY +++ D I + + +QLSR+ +IVMLI Y   L+FQL THR+ F                    VIGF S   WL+GM  + A+LS +
Sbjct:   80 KLYPLFSAVPLAVAAESLRLGRVWVFAFSLIGLAPLAERVSFLSEHIANTVGPTAGGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSILSNLLLVLGSSLLFGGIVNIGKERPLDKRQADVSIGLLLLGVLCHIATLVSKYTSSTGDSINSSSVMQLSRSCAIVMLIAYFGSLMFQLKTHRQIFELEEDSSDSSSSEDDATDKSVIGFASAMVWLIGMAVVTAMLSSY 311          
BLAST of CN185359 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 90/232 (38.79%), Postives = 119/232 (51.29%), Query Frame = 2
Query:    5 KLSVLFPAIPLALIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVMLIGYIAYLVFQLWTHREFF---XXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEF 688
            KL++L P  PLA++      ++ WVF L+L+G+TPLAER+ + TEQ+A YTGPTVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +K+Q +D+  A VNS                 Y    S++ A  + L LSR SS +MLI Y AYL FQL +    +                   P I  W    WL  +TA ++LLS +
Sbjct:   76 KLNLLLPFGPLAILVHYMIDSKGWVFLLTLVGITPLAERLGYATEQLACYTGPTVGGLLNATFGNVTELIISIFALKNGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFYQKDQVFDKGIATVNSGLLLMAVMGILFPAVLHY--THSEVHAGSSELALSRFSSCIMLIAYAAYLFFQLKSQSNSYSPLDEESNQNEETSAEDEDPEISKWEAIIWLSILTAWVSLLSGY 305          
BLAST of CN185359 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 89/232 (38.36%), Postives = 117/232 (50.43%), Query Frame = 2
Query:    5 KLSVLFPAIPLALIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVMLIGYIAYLVFQLWTHREFF---XXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEF 688
            KL++L P  PLA++       + W+F LSL+G+TPLAER+ + TEQ+A YTG TVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +KEQ +D+  A VNS                 Y    S++ A  + L LSR SS +ML+ Y AYL FQL +    +                   P I  W    WL  +TA ++LLS +
Sbjct:   76 KLNLLLPFGPLAILLHYLTDNKGWIFLLSLVGITPLAERLGYATEQLACYTGSTVGGLLNATFGNVTELIISIFALKSGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFSQKEQVFDKGNAVVNSGLLLMAVMGLLFPAVLHY--THSEVHAGSSELALSRFSSCIMLVAYAAYLFFQLKSQPSSYTPLTEETNQNEETSDDDEDPEISKWEAIIWLSILTAWVSLLSGY 305          
BLAST of CN185359 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 84/229 (36.68%), Postives = 113/229 (49.34%), Query Frame = 2
Query:    5 KLSVLFPAIPLALIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVMLIGYIAYLVFQLWTHREFFXXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEF 688
            KL++L P  PLA++       + W F LSL+G+TPLAER+ + TEQ++ YTG TVGGLLNAT GN  ELII+I AL    I VV+                   FCGG+    K+Q +D++ A V+S                 Y    S++ A  + L LSR  S +ML+ Y AYL FQL +   F+                P I  W    WL   TA ++LLS +
Sbjct:   87 KLNLLLPFGPLAILVHYLTDNKGWFFLLSLVGITPLAERLGYATEQLSCYTGATVGGLLNATFGNVIELIISIIALKNGMIRVVQLTLLGSILSNILLVLGCAFFCGGLVFPGKDQVFDKRNAVVSSGMLLMAVMGLLFPTFLHY--THSEVHAGSSELALSRFISCIMLVAYAAYLFFQLKSQPSFYTEKTNQNEETSNDDEDPEISKWEAIIWLSIFTAWVSLLSGY 313          
BLAST of CN185359 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.300e-28
Identity = 83/232 (35.78%), Postives = 113/232 (48.71%), Query Frame = 2
Query:    5 KLSVLFPAIPLALIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKAT-LQLSRASSIVMLIGYIAYLVFQLWTHREFF---XXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEF 688
            KL++L P  P ++I          VF  S+LG+TPLAER+ + TEQ+A YTGPTVGGLLNAT GNATE+IIAI+AL    I VV+                   F GGI +  K+Q + +  A VNS                 +    S++   A+ + LSR SS +ML+ Y +YL FQL      +                     IG W   AWL  +T  +++LSE+
Sbjct:   52 KLNLLLPFGPASIILHYTTSRHGLVFLFSMLGITPLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGIVHRNKDQVFSKATAVVNSGLLLMAVMGLMFPAVLHF--THSEVRQGASEVSLSRFSSCIMLVAYASYLYFQLSGRNNAYSPIGSEEMPNEDAAEEDEESEIGMWESIAWLAMLTLWVSILSEY 281          
The following BLAST results are available for this feature:
BLAST of CN185359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CAX3_ARATH1.418e-6356.41Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1_ARATH1.568e-6256.03Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX1A_ORYSJ2.193e-5651.93Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX1B_ORYSJ4.145e-4747.66Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX4_ARATH2.057e-4643.51Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1C_ORYSJ4.439e-4140.52Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
CAX2_ARATH6.425e-3238.79Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX5_ARATH4.164e-3138.36Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX6_ARATH1.026e-2936.68Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]
CAX3_ORYSJ3.300e-2835.78Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185359 ID=CN185359; Name=CN185359; organism=Citrus sinensis; type=EST; length=690bp
AGTTAAACTTTCAGTTCTCTTTCCCGCCATTCCTTTAGCCCTAATCGGCC
AGTGTTTTGGATTTGCAGAACCATGGGTATTCGCTCTGAGCTTACTAGGA
CTGACTCCTCTGGCTGAACGTGTCAGCTTCTTGACAGAGCAAATTGCTTT
CTACACTGGCCCAACAGTGGGGGGATTATTGAACGCGACATGCGGCAATG
CCACGGAGCTCATCATAGCAATTTTTGCCCTATACGAACGTAAAATTGAC
GTGGTCAAATATTCTCTTTTGGGTTCCATTCTCTCAAACCTTCTTCTGGT
TCTTGGCACTTCGCTCTTCTGTGGAGGGATTGCCAATCTCAGAAAGGAAC
AAAAATACGATAGAAAACAAGCCGATGTCAACTCGCTGCTGCTGCTGCTG
GCATTGCTGTGCCACATGTTACCATTGCTATTCAAATACGCTGCGGCCTC
CTCTGATATTACTGCCAAGGCGACCCTTCAGCTATCAAGAGCCAGCAGCA
TTGTAATGCTGATTGGTTACATCGCCTATCTCGTCTTCCAATTGTGGACA
CACCGGGAATTTTTTGAAGCTCAAGAGGATTCAGAGGACGACGATGATGT
GACTGAAGAAACGCCTGTGATTGGGTTTTGGAGTGGATTTGCTTGGCTTG
TTGGGATGACTGCTATCATTGCTTTACTATCAGAATTTGT
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