CN185353

Overview
NameCN185353
Unique NameCN185353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185353_ssr88 microsatellite CN185353_ssr88:88..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig504 contig Csv1_Contig504:9..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: IVD_ARATH (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2)

HSP 1 Score: 376.326 bits (965), Expect = 9.735e-104
Identity = 186/239 (77.82%), Postives = 207/239 (86.61%), Query Frame = 2
Query:   41 MQRLLGARSLCASFFTKKKKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 757
            MQR   ARS+   +  K ++ S +  S+SLLFDDTQLQFKESV +FA++NIAP A +ID++NSFP+DVNLWKLMG FNLHGITAP+E          HCIAMEEISRASGSV LSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+NGNKMWCTNGP A+TLVVYAKTD KAGSKGITAFIIEKGM GFSTAQKLDKLGMRGSDTC
Sbjct:    1 MQRFFSARSILG-YAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDKTNSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILNGNKMWCTNGPSAETLVVYAKTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTC 238          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: IVD2_SOLTU (Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 2.101e-98
Identity = 179/222 (80.63%), Postives = 193/222 (86.94%), Query Frame = 2
Query:   92 KKKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 757
            +K   AAFS TSLLFDDTQ QFKESV QFA+ENIAP A KID++N FPQDVNLWKLMG+FNL GIT P+E          HCIAMEEISRASGSVGLSYGAH+NLCINQLVR+G+  QK KYLPKLISGEHVGALAMSEP+AGSDVV MKCKADRV+GGY++NGNKMWCTNGP AQTLVVYAKTD+ A SKGITAFIIEKGM GFSTAQKLDKLGMRGSDTC
Sbjct:   10 QKPQFAAFS-TSLLFDDTQKQFKESVAQFAQENIAPHAEKIDRTNYFPQDVNLWKLMGDFNLLGITVPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHTNLCINQLVRNGTHEQKQKYLPKLISGEHVGALAMSEPDAGSDVVSMKCKADRVEGGYVLNGNKMWCTNGPTAQTLVVYAKTDVTASSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTC 230          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: IVD1_SOLTU (Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.982e-98
Identity = 176/242 (72.73%), Postives = 201/242 (83.06%), Query Frame = 2
Query:   41 MQRLLGARSLCASF---FTKKKKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 757
            M +L   RSL ++    F   +   AAFS TSLL DDTQ QFKESV +FA+ENIAP A KID++NSFP+++NLWKLMG+FNLHGITAP+E          HCIA+EEISRASG+V +SYG  SN+CINQLVR+G+P QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY++NGNKMWCTNGPVA TL+VYAKTD  AGSKGITAFIIEK MPGFSTAQKLDKLGMRGSDTC
Sbjct:    1 MHKLFAVRSLSSAIAKNFKSLQNQQAAFS-TSLLLDDTQKQFKESVAKFAQENIAPYAEKIDRTNSFPKEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYGVQSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGYVLNGNKMWCTNGPVANTLIVYAKTDTTAGSKGITAFIIEKEMPGFSTAQKLDKLGMRGSDTC 241          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: IVD_PONAB (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 8.318e-71
Identity = 131/208 (62.98%), Postives = 162/208 (77.88%), Query Frame = 2
Query:  140 DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 757
            + Q Q +++V +F +E++AP+A +ID+SN F      WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKLGMRGS+TC
Sbjct:   44 EEQRQLRQTVAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTC 251          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: IVD_HUMAN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.853e-70
Identity = 130/208 (62.50%), Postives = 162/208 (77.88%), Query Frame = 2
Query:  140 DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 757
            + Q Q ++++ +F +E++AP+A +ID+SN F      WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKLGMRGS+TC
Sbjct:   44 EEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTC 251          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: IVD_MOUSE (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 9.197e-70
Identity = 128/209 (61.24%), Postives = 161/209 (77.03%), Query Frame = 2
Query:  137 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 757
            ++ Q Q + ++ +F +EN+AP+A +IDQ+N F      WK +G+  + GITAP +          H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKLGMRGS+TC
Sbjct:   44 NEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDLTAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTC 252          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: IVD_BOVIN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.676e-69
Identity = 128/209 (61.24%), Postives = 161/209 (77.03%), Query Frame = 2
Query:  137 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 757
            ++ Q Q +++V +F +E++AP+A +IDQSN F      WK +GN  + GITAP +          + + MEEISR SG+VGLSYGAHSNLCINQ+VR+G+  QK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKLGMRGS+TC
Sbjct:   46 NEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDVTAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTC 254          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: IVD_RAT (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.328e-68
Identity = 127/209 (60.77%), Postives = 159/209 (76.08%), Query Frame = 2
Query:  137 DDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 757
            ++ Q Q + ++ +F +EN+AP+A +IDQSN F      WK +G+  + GITAP +          H + MEEISRAS +VGLSYGAHSNLCINQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV M+ KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GITAFI+EK MPGFST++KLDKLGMRGS+TC
Sbjct:   44 NEEQKQLRHTISKFVQENLAPKAQEIDQSNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDLTAVPASRGITAFIVEKDMPGFSTSKKLDKLGMRGSNTC 252          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACDS_CLOAB (Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum GN=bcd PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.751e-36
Identity = 82/199 (41.21%), Postives = 120/199 (60.30%), Query Frame = 2
Query:  158 KESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            ++ V +FA   + P AA+ID++  FP + N+ K MG + + GI   +E          + IA+EE+S+  G+ G+   AH++LC + +  HG+  QK KYL  L  GE +GA  ++EPNAG+D    +  A      Y+ING+K++ TNG VA T V++A TD   G+KGI+AFIIEKG  GFS  +   KLG+R S T
Sbjct:   13 RQMVREFAENEVKPIAAEIDETERFPME-NV-KKMGQYGMMGIPFSKEYGGAGGDVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYGLTEPNAGTDSGAQQTVAVLEGDHYVINGSKIFITNGGVADTFVIFAMTDRTKGTKGISAFIIEKGFKGFSIGKVEQKLGIRASST 209          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACDB_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmgC PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.935e-35
Identity = 77/203 (37.93%), Postives = 123/203 (60.59%), Query Frame = 2
Query:  146 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            Q+  ++ V  FAR+ IAP A  +++++ FP    L K MG   L GI  P++          + +A+ EISR S +VG+    H+++  N ++  G+  QK KY+P L SG+H+GA A++EP++GSD   ++  A + +G Y++NG+K++ TNG  A   + +A T    G  GI+AFI+EK  PGF+  +K  KLG+ GS+T
Sbjct:    7 QVMMRKMVRDFARKEIAPAAEIMEKTDEFP--FQLIKKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAFALTEPHSGSDAGSLRTTAIKKNGKYLLNGSKIFITNGGAADIYITFALTAPDQGRHGISAFIVEKNTPGFTVGKKERKLGLYGSNT 207          
The following BLAST results are available for this feature:
BLAST of CN185353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
IVD_ARATH9.735e-10477.82Isovaleryl-CoA dehydrogenase, mitochondrial OS=Ara... [more]
IVD2_SOLTU2.101e-9880.63Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fra... [more]
IVD1_SOLTU7.982e-9872.73Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=S... [more]
IVD_PONAB8.318e-7162.98Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pon... [more]
IVD_HUMAN1.853e-7062.50Isovaleryl-CoA dehydrogenase, mitochondrial OS=Hom... [more]
IVD_MOUSE9.197e-7061.24Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus... [more]
IVD_BOVIN2.676e-6961.24Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos... [more]
IVD_RAT1.328e-6860.77Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rat... [more]
ACDS_CLOAB1.751e-3641.21Acyl-CoA dehydrogenase, short-chain specific OS=Cl... [more]
ACDB_BACSU1.935e-3537.93Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmg... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001D09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185353 ID=CN185353; Name=CN185353; organism=Citrus sinensis; type=EST; length=757bp
GAGGGAGAAAGTAAAAAAGGGAAAAAGGTAAGAGAGAAGAATGCAGAGGC
TCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTACGAAGAAGAAGAAA
CATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTTGATGACACTCAATT
ACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGAAAACATTGCTCCTC
GTGCGGCAAAAATTGACCAATCAAATTCGTTCCCACAGGATGTTAATTTA
TGGAAACTCATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGA
ATACGGAGGGCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAG
AAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCT
AATTTGTGCATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGA
CAAGTACTTGCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCA
TGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCT
GATCGCGTAGATGGGGGTTATATTATAAATGGGAACAAGATGTGGTGCAC
CAATGGTCCAGTTGCTCAGACGTTGGTTGTTTACGCAAAAACAGACATTA
AAGCTGGCTCAAAAGGAATCACAGCATTTATCATAGAGAAAGGAATGCCC
GGATTCAGCACTGCCCAGAAGTTAGACAAGCTCGGGATGAGAGGAAGTGA
TACATGT
back to top