CN185334

Overview
NameCN185334
Unique NameCN185334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10835 contig Csv1_Contig10835:390..1199. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185334 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 2.665e-102
Identity = 184/267 (68.91%), Postives = 214/267 (80.15%), Query Frame = 3
Query:    9 DGVNVLSMSIGGGLTDSYRDTVAIGAFTAMAQGIFVSCSAGNGGPYADSISNVAPWITTVGAGTLDRDFPTYVRLGNGKNFSGVSLYSRRPSSGSMVPIVDAADVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVEVKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIIS 809
            D VNVLSMS+GGG++D YRD VAIGAF AM +GI VSCSAGN GP + S+SNVAPWITTVGAGTLDRDFP    LGNGKNF+GVSL+        ++P + A + S+ ++GNLCMTG+LIP KV GKIV+CDRG N+RV+KG  VK AGGVGMIL NT + GEELVADA LLP+  VGEKAGD I++Y+++DP P A+I   GT +G++PSPVVAAFSSRGPN ITP ILKPDLIAPGVNILA WTGA GPTGL SD R V FNIIS
Sbjct:  273 DNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIIS 539          
BLAST of CN185334 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.344e-45
Identity = 112/272 (41.18%), Postives = 161/272 (59.19%), Query Frame = 3
Query:    9 DGVNVLSMSIGGGLTDSYRDTVAIGAFTAMAQGIFVSCSAGNGGPYADSISNVAPWITTVGAGTLDRDFPTYVRLGNGKNFS--GVSLYSRRPSSGSMVPIVDAA-DVSSTSSGNLCMTGSLIPAKVAGKIVVCDRGGNSRVEKGVE--VKDAGGVGMILTNTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIIS 809
            DGV ++S+SIGG + D   D++++G+F AM +GI    SAGN GP + +++N  PWI TV A  +DR F + + LGNGK+FS  G+S++S +  S  +V  VDAA +         C + SL   KV GK++VC  GG      GVE  +K  GG G I+  +D Y +   A   + P+ +V    GD I  YI+S     A +I +  Q+ I P+P VA+FSSRGPNP +  +LKPD+ APG++ILA +T     TGL+ D +   F I+S
Sbjct:  272 DGVEIISISIGGPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGG-----GVESTIKSYGGAGAIIV-SDQYLDN--AQIFMAPATSVNSSVGDIIYRYINSTRSASA-VIQKTRQVTI-PAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILS 533          
BLAST of CN185334 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.206e-39
Identity = 108/274 (39.42%), Postives = 154/274 (56.20%), Query Frame = 3
Query:    9 DGVNVLSMSIGGGLTDSYR-DTVAIGAFTAMAQGIFVSCSAGNGGPYADSISNVAPWITTVGAGTLDRDFPTYVRLGNGKNFSGVSLYSRRPSSGSMVPIVDAADVSST----SSGNLCMTGSLIPAKVAGKIVVCDRG-GNSRVEKGVEVKDAGGVGMILT-NTDSYGEELVADAQLLPSANVGEKAGDAIKNYISSDPGPMATIISRGTQLGIQPSPVVAAFSSRGPNPITPEILKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIIS 809
            DGV+++S+S+GG     Y  D +AIG+F A+ +GI  S SAGNGGP   + ++++PW+ +V A T+DR F T V++GNG++F GVS+           P+V   D+ +T    S+   C   S+ P  + GKIVVC+   G     K ++    G  G+++T NT  Y     AD+  LPS+ +      A   YI S   P ATI    T L    +PVV +FSSRGPN  T +++KPD+  PGV ILA W  +V P G    +R+  FNIIS
Sbjct:  265 DGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSI---NTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLD----GAAGVLMTSNTRDY-----ADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWP-SVAPVG--GIRRNTLFNIIS 522          
The following BLAST results are available for this feature:
BLAST of CN185334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH2.665e-10268.91Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
XSP1_ARATH1.344e-4541.18Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
CUCM1_CUCME3.206e-3939.42Cucumisin OS=Cucumis melo PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001C20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185334 ID=CN185334; Name=CN185334; organism=Citrus sinensis; type=EST; length=810bp
CCCCCTGAGATGGCGTGAATGTTCTATCCATGTCTATTGGGGGAGGACTA
ACAGATTCCTACAGAGACACTGTTGCCATTGGAGCTTTCACTGCTATGGC
ACAGGGAATTTTTGTTTCATGCTCAGCTGGAAATGGTGGGCCTTATGCAG
ACAGCATATCCAACGTTGCACCTTGGATCACCACCGTAGGAGCTGGAACT
TTGGACCGTGATTTCCCAACCTATGTTAGGCTTGGAAATGGAAAGAACTT
CTCTGGCGTCTCGCTTTATAGTAGGAGACCATCATCTGGTTCCATGGTGC
CAATAGTTGATGCAGCAGATGTTAGTAGTACATCAAGTGGGAATCTCTGC
ATGACTGGCAGCTTGATTCCAGCAAAAGTTGCAGGAAAAATTGTGGTCTG
TGATCGAGGGGGAAATTCGAGAGTGGAAAAGGGTGTGGAGGTGAAAGATG
CTGGCGGAGTTGGGATGATTTTAACCAACACTGATTCCTATGGAGAAGAA
TTAGTTGCAGATGCACAGCTCTTGCCTTCAGCAAATGTAGGCGAGAAAGC
TGGTGATGCGATTAAGAATTACATTTCATCAGATCCTGGACCAATGGCCA
CAATTATTTCCAGAGGCACTCAGTTGGGGATCCAACCATCACCAGTTGTG
GCAGCATTCAGCTCTAGAGGTCCAAATCCCATCACTCCAGAAATACTCAA
ACCAGATCTCATAGCACCAGGAGTCAATATCCTAGCTGGCTGGACTGGTG
CAGTTGGTCCAACTGGGTTAGAAAGTGACAAGAGGCATGTAAGCTTCAAT
ATCATTTCTG
back to top