DC887797

Overview
NameDC887797
Unique NameDC887797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5157 contig Csv1_Contig5157:158..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.478e-57
Identity = 105/125 (84.00%), Postives = 113/125 (90.40%), Query Frame = -3
Query:  146 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 520
            + YA+HLKRSGKIELPTW DIVKTG LKELAPYDPDWYYIRAASMARK+Y RGGLGVG+ RRIYGG KRNGS PPHF KSSG +ARHIL QL+  NI+ELD+KGGRRITSSGQRDLDQVAGRIAV
Sbjct:   17 KAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQVAGRIAV 141          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.740e-56
Identity = 104/124 (83.87%), Postives = 111/124 (89.52%), Query Frame = -3
Query:  149 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 520
            + YAAHLKRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARK+Y RGGLGVG+ RRIYGG KRNGS PPHF KSSG VARHIL QLQ  NI++LD+KGGR+ITSSGQRDLDQVAGRIA
Sbjct:   17 KAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIA 140          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.041e-55
Identity = 103/124 (83.06%), Postives = 111/124 (89.52%), Query Frame = -3
Query:  149 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 520
            + YA+HLKRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARKIY RGGLGVG+ RRIYGG KRNGS PPHF KSSG +ARHIL QL+  +I+ELD+KGGRRITSSGQRDLDQVAGRIA
Sbjct:   17 KAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQVAGRIA 140          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.769e-46
Identity = 86/125 (68.80%), Postives = 102/125 (81.60%), Query Frame = -3
Query:  146 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 520
            + Y+AHLKRSGK+ELP W DIVKT   KEL PYDPDWYY RAAS+ARKIY R G+GVG  ++IYGG +RNGS PPHF KSSG+++R+IL QLQ   II++D KGGR ITS G+RDLDQVAGR+ V
Sbjct:   19 KAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 143          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.181e-37
Identity = 67/124 (54.03%), Postives = 93/124 (75.00%), Query Frame = -3
Query:  149 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 520
            R +AA LK+SGK+++P W D VKTG  KEL+PY+PDWY+IRAAS+ R +Y R   G+GS  +IYGG +R G+ P HF K++GS++R +L  L+   I+E D  GGRR+TS G+RDLD++A +IA
Sbjct:   15 RAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTSQGRRDLDRIAAQIA 138          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.150e-36
Identity = 69/124 (55.65%), Postives = 93/124 (75.00%), Query Frame = -3
Query:  149 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 520
            + +AA LK+SGK++LP W D+VKT   KELAPYDPDW+Y+RAAS AR +Y RGG+GVG+  +IYGG KR G+ P  F   S  V+R +L  L+   ++E D+ GGRR+TS GQRDLD++AG++A
Sbjct:   17 KAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKDAAGGRRLTSQGQRDLDRIAGQVA 140          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 2.042e-35
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = -3
Query:  149 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 520
            R  AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +Y RGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:   16 RALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.042e-35
Identity = 67/124 (54.03%), Postives = 93/124 (75.00%), Query Frame = -3
Query:  140 AAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 511
            AA  K+SGK++ P W D VK G  KELAP+D DWYYIR AS+AR +Y RGG+GVG+  +IYGG +RNG+ P H+S+ S +VAR +L  L+   ++E D  GGRR+TS GQRD+D++AG++ V++
Sbjct:   19 AAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMDRIAGQVVVLS 142          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_HUMAN (40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.042e-35
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = -3
Query:  149 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 520
            R  AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +Y RGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:   16 RALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_BOVIN (40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 2.042e-35
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = -3
Query:  149 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 520
            R  AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +Y RGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:   16 RALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
The following BLAST results are available for this feature:
BLAST of DC887797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS191_ARATH2.478e-5784.0040S ribosomal protein S19-1 OS=Arabidopsis thalian... [more]
RS193_ARATH2.740e-5683.8740S ribosomal protein S19-3 OS=Arabidopsis thalian... [more]
RS192_ARATH1.041e-5583.0640S ribosomal protein S19-2 OS=Arabidopsis thalian... [more]
RS19_ORYSJ9.769e-4668.8040S ribosomal protein S19 OS=Oryza sativa subsp. j... [more]
RS19_MYAAR2.181e-3754.0340S ribosomal protein S19 OS=Mya arenaria GN=RPS19... [more]
RS19_BRABE3.150e-3655.6540S ribosomal protein S19 OS=Branchiostoma belcher... [more]
RS19_PONAB2.042e-3555.6540S ribosomal protein S19 OS=Pongo abelii GN=RPS19... [more]
RS19_MYXGL2.042e-3554.0340S ribosomal protein S19 OS=Myxine glutinosa GN=r... [more]
RS19_HUMAN2.042e-3555.6540S ribosomal protein S19 OS=Homo sapiens GN=RPS19... [more]
RS19_BOVIN2.042e-3555.6540S ribosomal protein S19 OS=Bos taurus GN=RPS19 P... [more]

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Properties
Property NameValue
Genbank descriptionDC887797 EIC Citrus sinensis cDNA clone EIC0901 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887797 ID=DC887797; Name=DC887797; organism=Citrus sinensis; type=EST; length=522bp
ANANANTTCTTATCATTCATCTTAGGTTACTAACAGAGAACTGAAAATCA
ACTAACGATGCTTTCTATCTACTACTCCCATTCAAACAACTAACTCAATA
ACATCAATCCTTTTGAAAGCTTGAGCTAATCCCTCAAGGGGCAACAACTG
CAATCCGTCCAGCAACTTGATCAAGATCCCGCTGCCCACTGGATGTGATT
CTCCTTCCACCCTTGGAGTCAAGCTCGATGATGTTCGTGTTCTGCAATTG
GTGAAGTATGTGACGAGCAACAGAGCCACTGCTCTTGCTGAAATGAGGTG
GGCAGCTACCGTTCCTCTTCCCCCCTCCATAGATTCTACGGCAGGAACCA
ACACCAAGACCACCCCTAAAGTAGATCTTCCTCGCCATTGAAGCAGCCCT
GATATAGTACCAATCGGGGTCATAAGGGGCTAGCTCCTTCAACGTTCCAG
TCTTGACGATGTCGTTCCAAGTAGGAAGCTCAATCTTGCCGGAACGTTTG
AGATGGGCGGCGTAAGGCCTTG
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