CN185318

Overview
NameCN185318
Unique NameCN185318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10350 contig Csv1_Contig10350:1008..1744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185318 vs. ExPASy Swiss-Prot
Match: UBP6_ARATH (Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana GN=UBP6 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.060e-63
Identity = 123/180 (68.33%), Postives = 137/180 (76.11%), Query Frame = 3
Query:    3 EFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDXXXXXXXXXXXXXSSNLKDNDVKMTXXXXXXXXXXXXXXXXXXQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQGSGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARSISM 542
            +FVRFFWKRESNQKAKILRKVDYPL LD++D CS+DLRKKL+APRQKLR+             S + KD+DVKMT                  Q+G  T ++KETH+TGIYDLVAVLTHKGRSADSGHYVAWVKQ SGKWI+YDDDNP  QREEDITKLSGGGDWHMAYI MYKAR +SM
Sbjct:  307 QFVRFFWKRESNQKAKILRKVDYPLVLDIFDLCSEDLRKKLEAPRQKLREEEGKKLGLQTSAKSGS-KDSDVKMTDAEASANGSGESSTVNP-QEG--TSSEKETHMTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIQYDDDNPSMQREEDITKLSGGGDWHMAYITMYKARFVSM 482          
BLAST of CN185318 vs. ExPASy Swiss-Prot
Match: UBP7_ARATH (Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabidopsis thaliana GN=UBP7 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.869e-58
Identity = 118/184 (64.13%), Postives = 132/184 (71.74%), Query Frame = 3
Query:    3 EFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDXXXXXXXXXXXXXSSNLKDNDVKMTXXXXXXXXXXXXXXXXXXQDGVTTDTDKET----HLTGIYDLVAVLTHKGRSADSGHYVAWVKQGSGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARSISM 542
            +FVRFFWKRESNQKAKILRKVDYPLELD+YD CS+DLRKKL+APRQKLRD             SS+ K +DVKMT                  Q G ++  D++     H+TGIYDLV+VLTHKGRSADSGHYVAWVKQ SGKW++YDD N   QR EDI KLSGGGDWHMAYI MYKAR ISM
Sbjct:  306 QFVRFFWKRESNQKAKILRKVDYPLELDIYDLCSEDLRKKLEAPRQKLRDIEGQKLGLQASAKSSS-KGDDVKMTDAEGSSN-----------QSGESSTGDQQEGASPHMTGIYDLVSVLTHKGRSADSGHYVAWVKQESGKWVQYDDANTSLQRGEDIIKLSGGGDWHMAYIVMYKARLISM 477          
BLAST of CN185318 vs. ExPASy Swiss-Prot
Match: UBP14_MOUSE (Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus musculus GN=Usp14 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 63/180 (35.00%), Postives = 98/180 (54.44%), Query Frame = 3
Query:    3 EFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDXXXXXXXXXXXXXSSNLKDNDVKMTXXXXXXXXXXXXXXXXXXQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQGSGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARSISM 542
            + VRFF+K + +  AK+L+ V +PL LDVY+ C+ +L++K+ + R K +D               N    ++K                     +  +   D  ++  G YDL AVLTH+GRS+ SGHYV+WV++   +WI++DDD       EDI +LSGGGDWH+AY+ +Y  R + +
Sbjct:  327 QMVRFFYKEKESVNAKVLKDVKFPLMLDVYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNANDKNSPPKEIKY--------------------EPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVRRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEI 486          
BLAST of CN185318 vs. ExPASy Swiss-Prot
Match: UBP14_BOVIN (Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos taurus GN=USP14 PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.842e-27
Identity = 65/180 (36.11%), Postives = 97/180 (53.89%), Query Frame = 3
Query:    3 EFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDXXXXXXXXXXXXXSSNLKDNDVKMTXXXXXXXXXXXXXXXXXXQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQGSGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARSISM 542
            + VRFF+K + +  AK+L+ V +PL LDVY+ C+ +L++K+ + R K +D               + K N    T                   D + ++        G YDL AVLTH+GRS+ SGHYV+WVK+   +WI++DDD       EDI +LSGGGDWH+AY+ +Y  R + +
Sbjct:  327 QMVRFFYKEKESVNAKVLKDVKFPLMLDVYELCTPELQEKMVSFRSKFKDL-------------EDKKVNQQPKTGDKDSSPQKEVKYEPFSFADDIGSNN------CGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEI 487          
BLAST of CN185318 vs. ExPASy Swiss-Prot
Match: UBP14_PANTR (Ubiquitin carboxyl-terminal hydrolase 14 OS=Pan troglodytes GN=USP14 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = 3
Query:    3 EFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDXXXXXXXXXXXXXSSNLKDNDVKMTXXXXXXXXXXXXXXXXXXQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQGSGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARSISM 542
            + VRFF+K + +  AK+L+ V +PL LD+Y+ C+ +L++K+ + R K +D               + K N    T                   D + ++        G YDL AVLTH+GRS+ SGHYV+WVK+   +WI++DDD       EDI +LSGGGDWH+AY+ +Y  R + +
Sbjct:  327 QMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDL-------------EDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNN------CGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEI 487          
BLAST of CN185318 vs. ExPASy Swiss-Prot
Match: UBP14_HUMAN (Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = 3
Query:    3 EFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDXXXXXXXXXXXXXSSNLKDNDVKMTXXXXXXXXXXXXXXXXXXQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQGSGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARSISM 542
            + VRFF+K + +  AK+L+ V +PL LD+Y+ C+ +L++K+ + R K +D               + K N    T                   D + ++        G YDL AVLTH+GRS+ SGHYV+WVK+   +WI++DDD       EDI +LSGGGDWH+AY+ +Y  R + +
Sbjct:  327 QMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDL-------------EDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNN------CGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEI 487          
BLAST of CN185318 vs. ExPASy Swiss-Prot
Match: UBP14_RABIT (Ubiquitin carboxyl-terminal hydrolase 14 OS=Oryctolagus cuniculus GN=USP14 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27
Identity = 65/180 (36.11%), Postives = 100/180 (55.56%), Query Frame = 3
Query:    3 EFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDXXXXXXXXXXXXXSSNLKDNDVKMTXXXXXXXXXXXXXXXXXXQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQGSGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARSISM 542
            + VRFF+K + +  AK+L+ V +PL LDVY+ C+ +L++K+ + R K +D             +S+ K +  K                     +  +   D  ++  G YDL AVLTH+GRS+ SGHYV+WVK+   +WI++DDD       EDI +LSGGGDWH+AY+ +Y  R + +
Sbjct:  326 QMVRFFYKEKESVNAKVLKDVKFPLMLDVYELCTPELQEKMVSFRSKFKDIEDKKVNQQPN--ASDKKSSPQKEVRY-----------------EPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKHDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEI 486          
BLAST of CN185318 vs. ExPASy Swiss-Prot
Match: UBP14_CAEEL (Ubiquitin carboxyl-terminal hydrolase 14 OS=Caenorhabditis elegans GN=usp-14 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25
Identity = 67/186 (36.02%), Postives = 94/186 (50.54%), Query Frame = 3
Query:   12 RFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDXXXXXXXXXXXXXSSNLKDNDVKMTXXXXXXXXXXXXXXXXXXQDGVTTDT----DKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQGS-GKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARSISM*SDL 554
            RFF+K  +   AKIL+ V +P++LD YD CS +L+ KL A R  ++                   + D K+                    DGV   T    D  ++ +G YDL  ++THKGRS+  GHYVAW++    GKW  +DD++     EE I K SGGGDWH AY+ +Y+AR I    +L
Sbjct:  300 RFFYKESTKTNAKILKSVQFPMQLDTYDLCSQELKDKLVARRADIK------------------LEEDAKLERELRKKVLDKEQGDKIF-DDGVALPTAFEDDAGSNNSGFYDLKGIITHKGRSSQDGHYVAWMRSSEDGKWRLFDDEHVTVVDEEAILKTSGGGDWHSAYVLLYEARVIKQFPEL 466          
BLAST of CN185318 vs. ExPASy Swiss-Prot
Match: UBP6_SCHPO (Ubiquitin carboxyl-terminal hydrolase 6 OS=Schizosaccharomyces pombe GN=ubp6 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 61/180 (33.89%), Postives = 89/180 (49.44%), Query Frame = 3
Query:    6 FVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDXXXXXXXXXXXXXSSNLKDNDVKMTXXXXXXXXXXXXXXXXXXQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQGSGK--WIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARSIS 539
            FVRF+WK    +KAKILRKV +P ELD  +FC+ +L +KL   R KLR+                ++ ++ +                     +      D+  + TG+YDLV VL+H G SA SGHY AW++  + +  W  ++D        E I  L GGG+   AYI +YKA+ I+
Sbjct:  291 FVRFYWKASIGKKAKILRKVKFPFELDAVEFCTPELSQKLIPVRDKLREIEKNDEEHERAAKRIKIQPSEDEKEAEAECRLTQVATCQSLVDPE---LADDEGANPTGLYDLVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVSIVPAEKIETLDGGGEADSAYILLYKAKDIA 467          
The following BLAST results are available for this feature:
BLAST of CN185318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
UBP6_ARATH6.060e-6368.33Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabido... [more]
UBP7_ARATH5.869e-5864.13Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabido... [more]
UBP14_MOUSE6.329e-2835.00Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus mu... [more]
UBP14_BOVIN1.842e-2736.11Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos ta... [more]
UBP14_PANTR5.358e-2735.56Ubiquitin carboxyl-terminal hydrolase 14 OS=Pan tr... [more]
UBP14_HUMAN5.358e-2735.56Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo s... [more]
UBP14_RABIT6.998e-2736.11Ubiquitin carboxyl-terminal hydrolase 14 OS=Orycto... [more]
UBP14_CAEEL1.011e-2536.02Ubiquitin carboxyl-terminal hydrolase 14 OS=Caenor... [more]
UBP6_SCHPO1.784e-2233.89Ubiquitin carboxyl-terminal hydrolase 6 OS=Schizos... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185318 ID=CN185318; Name=CN185318; organism=Citrus sinensis; type=EST; length=737bp
AGGAGTTTGTTCGCTTTTTCTGGAAGAGGGAGTCAAACCAGAAAGCCAAG
ATTTTGAGGAAAGTGGATTACCCGCTGGAGTTGGATGTTTACGATTTCTG
TTCGGATGATCTTCGCAAAAAATTGGACGCCCCTCGTCAGAAACTAAGGG
ATGAGGAGGGTAAAAAGCTTGGTTTAAAAGGTGGTGAGAAGAGCTCTAAT
TTGAAGGATAATGACGTCAAAATGACAGAAGCCGAGGGATCAGCATCAAA
TGGAAGTGGAGAATCATCAGTAGCTTCATCTCAAGATGGGGTTACTACTG
ACACTGACAAGGAAACACATCTAACTGGAATCTACGATCTGGTTGCTGTG
CTGACCCACAAGGGTAGGAGTGCTGATTCAGGGCATTATGTTGCTTGGGT
GAAGCAAGGAAGTGGAAAATGGATTGAATATGATGATGATAATCCCCTTC
CTCAGCGGGAGGAAGACATCACTAAACTGTCTGGAGGAGGTGATTGGCAT
ATGGCATACATTTGCATGTACAAGGCTCGTTCCATCTCCATGTAGTCCGA
TTTAGCTTTCAAATCAATTTGGGAGAGGTTGATCTTTGATTTTAAATCAC
GGAAACTTTGGTAGTTTGAAAATTGAATTGTGAATTGGTCAATAGATCCT
TACAGAATTGTGTTGTACTGCTAAAACTGTGCCGTATATATCTTATTTAT
AACTATACTTTTAGGGGCGCTTTTTTTTTTTTTTTTT
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