CN185304

Overview
NameCN185304
Unique NameCN185304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185304_ssr44 microsatellite CN185304_ssr44:44..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig700 contig Csv1_Contig700:635..1473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185304 vs. ExPASy Swiss-Prot
Match: EP1G_DAUCA (Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.390e-32
Identity = 76/178 (42.70%), Postives = 105/178 (58.99%), Query Frame = -1 
Query:  369 KSSNVPRPVVYFTFPV-----QFSGLKNVTFNSAPETDEAFAYQLTL----DSSSGGGLILARPKYNATISFLRLGVDGNLRIFTYYDKVDSQPTEETFTLFDR------------DSIWETECQLPERCGKFGLCDDNQCVACPTEKG-LLGWSKECAPTLVNFCRIAAFHYYKVEG 836
            K +  P+P+ Y++F +     +   L+NVTF    E D+ FA+ L+L     +S GG  IL R KYN T+SFLRL +DGN++I+TY DKVD    E T+TLF +                 +ECQLP++CG FGLC+++QCV CPT  G +L WSK C P  ++ C    FHY K+ G
Sbjct:  208 KPTTSPKPIRYYSFSLFTKLNKNESLQNVTFEFENENDQGFAFLLSLKYGTSNSLGGASILNRIKYNTTLSFLRLEIDGNVKIYTYNDKVDYGAWEVTYTLFLKAPPPLFQVSLAATESESSECQLPKKCGNFGLCEESQCVGCPTSSGPVLAWSKTCEPPKLSSCGPKDFHYNKLGG 385
The following BLAST results are available for this feature:
BLAST of CN185304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EP1G_DAUCA1.390e-3242.70Epidermis-specific secreted glycoprotein EP1 OS=Da... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185304 ID=CN185304; Name=CN185304; organism=Citrus sinensis; type=EST; length=839bp
GGGGGCTGGAGGGCCCCCTTTTTTTTTTACACAAACATTTCACTCATTCA
TTCATTATTTTATATATGGACACCCTACAGTTATTATTGTGGTGGCATTG
AAAGCCCACATATCTATCTGTTGTTATTTCGATCACAGATCTAATCCACT
TATTTGATACTTAATTGCGGGGCAACCTTGATGAATCCAACATGTGTAGA
GTTGGGGAATTTGGTAAGAGTCTTCAAGTCAAAAGCAATCCAACATTTCG
ATGTCTCCTGATGGTAAAAATACCCCACACATCTACAATCCGTGCTACAT
CTGTTGCCACAATCTTCAACTCTGATGGGTCCAGTTCCATTATTATATTT
GCTAATATAATGATCAACCCCTTCAACTTTATAATAATGGAAAGCCGCTA
TCCGACAAAAATTCACTAGCGTCGGTGCACACTCTTTACTCCAGCCAAGC
AAGCCCTTCTCTGTAGGACAAGCAACACATTGATTGTCATCACACAGTCC
AAATTTACCACATCTCTCAGGAAGCTGACACTCAGTTTCCCAAATTGAAT
CTCTATCAAAGAGAGTGAATGTTTCTTCCGTTGGCTGCGAATCAACCTTG
TCGTAATAAGTAAAGATCCTGAGATTCCCATCTACTCCTAGCCGAAGAAA
CGATATAGTGGCGTTGTACTTTGGCCTTGCCAAAATAAGACCGCCCCCGG
ATGAAGAATCTAGAGTCAGTTGATAAGCGAAAGCTTCATCAGTTTCCGGG
GCAGAATTGAACGTTACATTCTTTAAGCCACTAAACTGAACAGGGAAAGT
AAAGTAAACAACGGGCCGGGGAACATTGCTGCTTTTTGT
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