DC887781

Overview
NameDC887781
Unique NameDC887781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length315
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13743 contig Csv1_Contig13743:28..342. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887781 vs. ExPASy Swiss-Prot
Match: TOM5_ARATH (Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana GN=TOM5 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.755e-12
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = -3 
Query:  185 KAFWHSQXHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 313
            KA WHS+ HDE+KWA+N KLLRA G+FA  + LMRSYGDLM +
Sbjct:   12 KALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54
The following BLAST results are available for this feature:
BLAST of DC887781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TOM5_ARATH8.755e-1267.44Mitochondrial import receptor subunit TOM5 homolog... [more]
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Properties
Property NameValue
Genbank descriptionDC887781 EIC Citrus sinensis cDNA clone EIC0870 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887781 ID=DC887781; Name=DC887781; organism=Citrus sinensis; type=EST; length=315bp
CCANGCTTTTAGCTATTCCCATATTATATTAATGTCGTAAACTGACAAAC
GTTATGTCAACTAAAAAGTCAAACAAGCAAAACCCTTGAAAAAAAATCCT
AAAAATTGATCCAAAAACATAAGAAATACACTCCAGTCTTGGGCATAATT
TGGAGTTGGGACAACAGCCCTTCATGATTCCTCATATTGCCATAAGATCA
CCATAACTGCGCATCAGAAAAATCGACGCTGCAAACAGGCCACCAGCACG
CAGCAGTTTCGCGTTGAGAGCCCATTTCTCCTCGTCGTGGANCTGAGAGT
GCCAGAAGGCCTTTA
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