CN185296

Overview
NameCN185296
Unique NameCN185296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:364..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185296 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = -2 
Query:  562 LIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 735
            L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:   91 LRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN185296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC3.073e-1458.62Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185296 ID=CN185296; Name=CN185296; organism=Citrus sinensis; type=EST; length=739bp
TTTTTTTTTTTTTTTTTAATTAGAACCCAAACATGATTAATAATATATAC
ACAATGTGCGGATTGCCCACATAACAAGAAAAACACTCTATCAAAGAAAA
AGGTCAAAAGAACCTCCAAGAGTGAGTAACAACTTTATTTTTAACTTAAT
AGAAGGAAAAATGAAGGGTAGTAGTTTCAGCTTTTGAGTTGGAAGTAGGC
AAATTCACAGCAAGATCAATCAAATTGATCCTTAATTGATAAATTAATGT
GAGTCCCATTGATTAGTCCAGTCTGCTTCACTTCCCACACGTGGAATGCT
GTTGATCCTAGTGTATTTATCAACCTTGAAATTGGCTCCACACATGACAC
CTTCACTATCTACTCTTGGCATTGCCCTTATCTTGTTCATTGGATGCTCA
AAGCTCATCAATCCTCCTTCACTGTGGAACATGCACCCCTGTGGGAAGGG
AGCAAATGACTTGGCACATCCCTCTTTGATGACCTCCAAGTCATCAGATA
TGACCACAGATCCATCGGCTGCAATTCCCCAGTACAGCTTCACTCCCCCA
TCAGAACCCAGAGCAGTGAAGACCGTGCCGGCCTTGCTATCGTAGACCAC
AAAAGCAAAGCTCCCATCAAGATCCTTGACAACCTGATCAGCTGGGTAAG
GACCCCGGTCTCTGAGCGTACGATACGCCTCTATCACAAACATGGCCTCA
TCGGTTCCCTTTGACAACCCATATTGCCTGATCAGCGAG
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