DC887778

Overview
NameDC887778
Unique NameDC887778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12895 contig Csv1_Contig12895:670..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887778 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.470e-11
Identity = 33/69 (47.83%), Postives = 40/69 (57.97%), Query Frame = -3 
Query:   83 PTVVLHFRGADVSLPATNYLIPVDSSGTFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAASRIGFAPRGC 289
            PT V+HF G D+ LP+ NY I   S+G  C A   +  G+SI GNIQQQ   VVYD   S + FA   C
Sbjct:  367 PTFVMHFDGGDLELPSENYFIS-PSNGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434
The following BLAST results are available for this feature:
BLAST of DC887778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NEP1_NEPGR4.470e-1147.83Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionDC887778 EIC Citrus sinensis cDNA clone EIC0863 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887778 ID=DC887778; Name=DC887778; organism=Citrus sinensis; type=EST; length=291bp
AAAACACGCAGAGACAGAATNNTTAACAGGAAAAGAGAGTTTTTCCCTTA
CAACTACACCCACGCGCAATGCAANCTCAAGCGCACCCGCGCGGAGCAAA
CCCGATCCGTGAAGCGGCCAAGTCATAAACAACCCGGAAGCCCTGTTGCT
GAATATTTCCAATTATCGACAACCCGCTCATGGTTCCTGCAAATGCAAAG
CAAAATGTTCCGCTACTATCCACGGGTATTAGATAATTAGTCGCCGGCAA
CGACACATCTGCACCTCTGAAATGCAACACCACCGTGGGCA
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