DC887774

Overview
NameDC887774
Unique NameDC887774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:149..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887774 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 3.698e-58
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = -2
Query:  115 LIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 462
            LIKINGCPIELVEPEILRFKA EPILLLGR RF GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   30 LIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of DC887774 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 6.307e-58
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = -2
Query:  115 LIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 462
            LIKING PIELVEPEILRFKAFEPILLLG+ RF GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   30 LIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of DC887774 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.520e-56
Identity = 104/116 (89.66%), Postives = 112/116 (96.55%), Query Frame = -2
Query:  115 LIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 462
            LIK+NGCPIEL +PEILRFK FEPILLLG+HRF GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:   31 LIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of DC887774 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 5.903e-56
Identity = 103/116 (88.79%), Postives = 112/116 (96.55%), Query Frame = -2
Query:  115 LIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 462
            LIK+NGCPIEL +PEILRFK FEP+LLLG+HRF GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:   31 LIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of DC887774 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.243e-55
Identity = 104/116 (89.66%), Postives = 113/116 (97.41%), Query Frame = -2
Query:  115 LIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 462
            LIK+NG PIELV+PEILR+KAFEPILLLGRHRF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:   30 LIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145          
BLAST of DC887774 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 6.754e-52
Identity = 98/116 (84.48%), Postives = 108/116 (93.10%), Query Frame = -2
Query:  115 LIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 462
            +IK+NG PIEL +PEILRFK FEP+LLLG+HRF GVDMRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCE KKFGG GARARFQKSYR
Sbjct:   31 MIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146          
BLAST of DC887774 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 8.821e-52
Identity = 98/109 (89.91%), Postives = 107/109 (98.17%), Query Frame = -2
Query:  115 PIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 441
            PIELVEPEILR+KAFEP+LLLGR +F GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:   34 PIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142          
BLAST of DC887774 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.567e-51
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = -2
Query:  115 LIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 462
            LIK+NG PIEL+ PE+LR KAFEPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   34 LIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of DC887774 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.567e-51
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = -2
Query:  115 LIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 462
            LIK+NG PIEL+ PE+LR KAFEPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:   34 LIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of DC887774 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 3.469e-48
Identity = 89/116 (76.72%), Postives = 105/116 (90.52%), Query Frame = -2
Query:  115 LIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 462
            LIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:   31 LIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
The following BLAST results are available for this feature:
BLAST of DC887774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS16_GOSHI3.698e-5896.5540S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS16_LUPPO6.307e-5896.5540S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS161_ARATH4.520e-5689.6640S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS163_ARATH5.903e-5688.7940S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS16_FRIAG2.243e-5589.6640S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS162_ARATH6.754e-5284.4840S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_TORRU8.821e-5289.9140S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS16_ORYSJ2.567e-5183.6240S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI2.567e-5183.6240S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_RAT3.469e-4876.7240S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC887774 EIC Citrus sinensis cDNA clone EIC0858 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887774 ID=DC887774; Name=DC887774; organism=Citrus sinensis; type=EST; length=463bp
ATAACAATAACCATTCAAAATCTATGTGGCCTCAAAAACATATTAATTAA
TCCTTCAATAAAACCCAAAATTAATAACAATAATAAAAACGCAACATAAA
CCTCTGTTTCTTCAACGGTAAGATTTCTGGAACCTAGCCCTGGCGCCGCG
TCCTCCGAACTTCTTAGGCTCACAGCGTCTAGGATCAGCCACAAGCAAAG
TCCTATCGTACCTAACCAGAATGTCTTTTATCTCCTTCTTGCTCTGTTCG
TCCACGTACTTCTGATAAAACGCGACCAAGGCCTTGGCGATGCTCTGGCG
TATAGCGTAGATCTGAGATGTGTGGCCTCCGCCCTTGACGCGGATCCTCA
TGTCTACTCCGTTGAAACGGTGTCGTCCGAGCAATAGGATCGGCTCGAAN
GCCTTGAAACGCAGGATCTCTGGCTCCACAAGCTCGATTGGGCAGCCGTT
GATCTTGATCAAG
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