DC887773

Overview
NameDC887773
Unique NameDC887773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11471 contig Csv1_Contig11471:735..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887773 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.320e-27
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = -1
Query:  165 HSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 341
            HSTINNLAIGRSVDET+RTLQALQYVQ+NPDEVCPAGWKPGDKSMKPDPK SKEYFAAI
Sbjct:  203 HSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKGSKEYFAAI 261          
BLAST of DC887773 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.320e-27
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = -1
Query:  165 HSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 341
            HSTINNL IGRSVDET+RTLQALQYVQENPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  213 HSTINNLGIGRSVDETMRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 271          
BLAST of DC887773 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.336e-27
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = -1
Query:  165 HSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 341
            HSTINNL IGRSVDET+RTLQALQY+QENPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  208 HSTINNLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 266          
BLAST of DC887773 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.861e-24
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = -1
Query:  165 HSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 341
            HSTINNL IGRSVDET+RTLQALQY   NPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  208 HSTINNLGIGRSVDETMRTLQALQYTG-NPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 265          
BLAST of DC887773 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.654e-24
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -1
Query:  165 HSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 341
            HSTINNL IGRSVDETLRTLQALQYV++ PDEVCPAGWKPG+KSMKPDPK SKEYFAAI
Sbjct:  153 HSTINNLGIGRSVDETLRTLQALQYVKK-PDEVCPAGWKPGEKSMKPDPKGSKEYFAAI 210          
BLAST of DC887773 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = -1
Query:  165 HSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 341
            HSTINNL IGRSVDETLRTL+ALQYV++ PDEVCPAGWKPG+KSMKPDPK SKEYFAAI
Sbjct:  153 HSTINNLGIGRSVDETLRTLRALQYVKK-PDEVCPAGWKPGEKSMKPDPKGSKEYFAAI 210          
BLAST of DC887773 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.010e-20
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = -1
Query:  168 HSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 341
            +STINNL  GRSV+ETLR LQA+QYVQ +PDEVCPA WKPGDK+M PDP  SK YFAA
Sbjct:  141 YSTINNLEFGRSVEETLRVLQAIQYVQSHPDEVCPANWKPGDKTMNPDPIKSKNYFAA 198          
BLAST of DC887773 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.144e-19
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = -1
Query:  168 HSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 341
            +ST+NNL  GRSV+ETLR LQA+QYVQ +PDEVCPA WKPGD++M PDP  SK YFAA
Sbjct:  141 YSTVNNLEFGRSVEETLRVLQAIQYVQAHPDEVCPANWKPGDRTMNPDPIKSKNYFAA 198          
BLAST of DC887773 vs. ExPASy Swiss-Prot
Match: Y755_SYNY3 (Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803) GN=sll0755 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = -1
Query:  159 HSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI*E 341
            ++T+NNL+ GRSVDETLR L+A+++VQ +P+EVCP  W+ GDK+M PDP+ +K YF  + E
Sbjct:  139 YATVNNLSFGRSVDETLRVLKAIRHVQSHPNEVCPVDWQEGDKTMIPDPEKAKTYFETVAE 199          
BLAST of DC887773 vs. ExPASy Swiss-Prot
Match: PRDX1_CHICK (Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.729e-13
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = -1
Query:  171 TINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 335
            TIN+L +GRSVDETLR +QA Q+  ++  EVCPAGWKPG  ++KPD + SKEYF+
Sbjct:  143 TINDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVQKSKEYFS 196          
The following BLAST results are available for this feature:
BLAST of DC887773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
BAS1_ORYSJ3.320e-2794.922-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]
BAS1B_ARATH3.320e-2793.222-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
BAS1A_ARATH4.336e-2791.532-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
BAS1_SPIOL5.861e-2488.142-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
BAS1_HORVU7.654e-2489.832-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_WHEAT2.227e-2388.142-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
YCF42_PORYE3.010e-2075.86Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
YCF42_PORPU1.144e-1972.41Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]
Y755_SYNY31.709e-1555.74Putative peroxiredoxin sll0755 OS=Synechocystis sp... [more]
PRDX1_CHICK2.729e-1361.82Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionDC887773 EIC Citrus sinensis cDNA clone EIC0857 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887773 ID=DC887773; Name=DC887773; organism=Citrus sinensis; type=EST; length=341bp
AAAGAGGTGGACNANTCCCGTCCAATGCATTTATTCCCCACAGGCTGCTC
CGCAAAACTCAACAGTAAGTAGCAAAATCACATTACATGGAAAAACAAAA
CTCATCTACACCTCCCTAATAGACATANNATATGCATACGAGGTTCCAAT
GCTAACCCCTCTTATATAGCTGCAAAGTACTCCTTGCTGAGTTTTGGGTC
TGGCTTCATGGATTTGTCCCCGGGCTTCCATCCTGCTGGGCAAACTTCAT
CTGGGTTCTCCTGCACGTACTGCAAGGCCTGAAGTGTTCTCAGTGTCTCG
TCAACACTCCTACCAATGGCAAGGTTGTTAATGGTTGAGTG
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