DC887772

Overview
NameDC887772
Unique NameDC887772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5619 contig Csv1_Contig5619:1..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887772 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.636e-42
Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = -3
Query:  386 ELGIGIVAYSXLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIK 676
            ELGIGIVAYS LGRGF SSGPKL+E  S ED+R+YLPRFQAENLE+NK L+ER+ E+A RKGCTPSQLALAWVHHQG+DVCPIPGTTK+EN NQN+K
Sbjct:  206 ELGIGIVAYSPLGRGFLSSGPKLLEDMSNEDYRKYLPRFQAENLENNKNLYERICEMAVRKGCTPSQLALAWVHHQGNDVCPIPGTTKIENLNQNMK 302          
BLAST of DC887772 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 57/140 (40.71%), Postives = 79/140 (56.43%), Query Frame = -3
Query:  257 ELGIGIVAYSXLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASADAVKGDRYVGKASTYEDSETPPL 676
            E  I IV Y+ LGRGF +   K  + F + DFR+  PR+Q EN   N +L  ++ +IAT    TP QL+LAW+  QGDD+ PIPGT +V+   +N  AL VKL+   + E+        V G RY   A +    +TPP+
Sbjct:  199 ENNITIVCYAPLGRGFLTGAYKSPDDFPEGDFRRKAPRYQKENFYKNLELVTKIEKIATANNITPGQLSLAWLLAQGDDILPIPGTKRVKYLEENFGALKVKLSDATVKEIREACDNAEVIGARYPPGAGSKIFMDTPPM 338          
BLAST of DC887772 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.498e-17
Identity = 39/54 (72.22%), Postives = 48/54 (88.89%), Query Frame = -3
Query:  515 ELGIGIVAYSXLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERV 676
            ELGIGIVAYS LGRGFFSSG KLV+S S++DFR+++PRFQ ENL+ N ++FERV
Sbjct:  201 ELGIGIVAYSPLGRGFFSSGAKLVDSLSEQDFRKHMPRFQPENLDKNAQIFERV 254          

HSP 2 Score: 21.557 bits (44), Expect = 9.498e-17
Identity = 12/46 (26.09%), Postives = 22/46 (47.83%), Query Frame = -2
Query:  372 NSNEERMHPITACIXXXXXXXXXXXXXSWNHQG*ELQSKY*SSVRE 509
            + + ERMH ITA +             +W+++  +LQ +   +V E
Sbjct:  257 DGSTERMHAITARVGLGSPPRKRRLPHTWHNKNRQLQPERGGTVCE 302          
BLAST of DC887772 vs. ExPASy Swiss-Prot
Match: PLR1_YEAST (Putative pyridoxal reductase OS=Saccharomyces cerevisiae GN=YPR127W PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 45/137 (32.85%), Postives = 61/137 (44.53%), Query Frame = -3
Query:  302 ELGIGIVAYSXLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLF-----ERVNEIATRKGCTPSQLALAWVHH-------QGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASADAVKGDRY 676
            ELG+ I+ YS LGRG  +   K      + DFR+ L RF  E+L+ N  L      E V++       T +QLAL WV H        G    PIP  + +   N+N      KLT +E   +    +     GDRY
Sbjct:  206 ELGLSIICYSPLGRGLLTGQLKSNADIPEGDFRKSLKRFSDESLKKNLTLVRFLQEEIVDKRPQNNSITLAQLALGWVKHWNKVPEYSGAKFIPIPSGSSISKVNENFDEQKTKLTDQEFNAINKYLTTFHTVGDRY 342          
The following BLAST results are available for this feature:
BLAST of DC887772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
A115_TOBAC8.636e-4280.41Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
YAKC_SCHPO2.000e-2240.71Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
IN22_MAIZE9.498e-1772.22IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
PLR1_YEAST7.883e-1132.85Putative pyridoxal reductase OS=Saccharomyces cere... [more]
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Properties
Property NameValue
Genbank descriptionDC887772 EIC Citrus sinensis cDNA clone EIC0856 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887772 ID=DC887772; Name=DC887772; organism=Citrus sinensis; type=EST; length=678bp
CGTCATGGGGTCNAGAAATTTCAGANTAATATTACAGCCGTGTTGTTTTA
TTTAATGTCTCATATCCTTTGCTTACACTAAATCCAACCTCTAATATCTT
ATACAAATAGAATCCACATGCAAAAGACAATGATTTTATCCCAAACACAA
CATAGGAACTCATGGCAATTATAGAACTCTCAATATGCTTGTGGACTGTG
CAACACGGTTGAAGATGACAGGATACCAATGGCCTTTAAGAAGGTTTCCA
TGAAGACAGAGGTGGAGTTTCGGAGTCTTCGTAAGTAGATGCCTTACCCA
CATACCGATCGCCCTTTACAGCATCTGCTGAAGCAATGGATTCAAGTTCC
ACCATTTCTTCTAGAGTTAGTTTCACGGACAGAGCTTTAATATTTTGATT
GCAGTTCTCAACCTTGGTGGTTCCAGGAATCGGACATACGTCATCTCCTT
GGTGATGAACCCATGCTAATGCAAGCTGTGATGGGGTGCATCCTTTCCTC
GTTGCTATTTCATTAACACGCTCAAATAACTTTTTGTTATGCTCCAAATT
TTCAGCTTGGAACCTCGGTAGATACTGTCTAAAATCTTCCTTTGAAAAGC
TTTCAACCAACTTAGGCCCTGAGGAAAAAAATCCTCGTCCTAGANGACTG
TATGCAACAATTCCAATGCCAAGTTCCC
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