DC887770

Overview
NameDC887770
Unique NameDC887770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2750 contig Csv1_Contig2750:229..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887770 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.712e-44
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = -3
Query:  214 DSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 489
            DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   22 DSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of DC887770 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.712e-44
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = -3
Query:  214 DSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 489
            DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   22 DSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of DC887770 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.712e-44
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = -3
Query:  214 DSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 489
            DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   22 DSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of DC887770 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.542e-44
Identity = 84/92 (91.30%), Postives = 92/92 (100.00%), Query Frame = -3
Query:  214 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 489
            DSGAG+K+YVH+RVQQRNGRKSLTTVQGLKK++SYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKE+IK+HGF
Sbjct:   22 DSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of DC887770 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.030e-43
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = -3
Query:  214 DSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 489
            DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSY+KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   22 DSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of DC887770 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.296e-43
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3
Query:  214 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 489
            DSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY+KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:   22 DSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of DC887770 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 2.998e-43
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = -3
Query:  214 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 489
            DSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:   22 DSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of DC887770 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.488e-42
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = -3
Query:  214 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 489
            DSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ I++HGF
Sbjct:   22 DSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of DC887770 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.211e-37
Identity = 74/92 (80.43%), Postives = 82/92 (89.13%), Query Frame = -3
Query:  214 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 489
            D+   +KEYVHIR+QQRNGRKSLTTVQGLKKE SY+KILKDLKK  CCNGTVV D ELG+VIQLQGDQRKNVSTF+VQAGIVKK+ IK+H F
Sbjct:   22 DATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of DC887770 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.489e-29
Identity = 54/89 (60.67%), Postives = 75/89 (84.27%), Query Frame = -3
Query:  214 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 480
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of DC887770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_SPOST2.712e-4492.55Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ2.712e-4492.55Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI2.712e-4492.55Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_SALBA3.542e-4491.30Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_MAIZE1.030e-4391.49Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI12_ARATH2.296e-4391.30Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI11_ARATH2.998e-4391.30Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_BRAOL1.488e-4290.22Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_PIMBR3.211e-3780.43Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1B_PIG5.489e-2960.67Eukaryotic translation initiation factor 1b OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionDC887770 EIC Citrus sinensis cDNA clone EIC0854 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887770 ID=DC887770; Name=DC887770; organism=Citrus sinensis; type=EST; length=491bp
ACCATAATCATCCCACATTACATAAAACCGAGAACTAGGAAACATCAGTG
GCACAAAAACAGATAAAACAATACTAAACCAACACAGGAGATGATATAAC
AGCACCACCACATACAAATTTTTTTTTTTTTAATAGTATCAATAGCATGT
TCTGCACTGCACTGACGAACGCGGGTCACCAAATGTGCAGAAACGGAAGT
TGCTGTTTACTTAAAAGCCATGCATTTTGATATGTTCCTTCTTCACAATC
CCAGCCTGAACAAGGAACGTAGATACATTCTTCCGCTGGTCACCTTGGAG
TTGAATGACCTGTCCTAGTTCAGGATCCTGGACCACTGTTCCATTGCAGC
AAAATTCCTTTTTGAGGTCCTTGAGGATTTTGTTGTAACTAAATTCTTTC
TTCAACCCCTGGACAGTTGTCAGGCTTTTCCTACCATTCCGTTGCTGAAC
ACGGATATGCACATACTCTTTTGAACCAGCACCTGAGTCCT
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