DC887768

Overview
NameDC887768
Unique NameDC887768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:166..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887768 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.653e-22
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = -2
Query:  378 YGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 542
            +GDI +SKIINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:   29 FGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of DC887768 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.683e-22
Identity = 48/55 (87.27%), Postives = 55/55 (100.00%), Query Frame = -2
Query:  378 YGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 542
            YG++L+SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   31 YGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of DC887768 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.810e-22
Identity = 47/55 (85.45%), Postives = 55/55 (100.00%), Query Frame = -2
Query:  378 YGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 542
            YGD+++SKIINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of DC887768 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.118e-21
Identity = 46/55 (83.64%), Postives = 55/55 (100.00%), Query Frame = -2
Query:  378 YGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 542
            +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   31 FGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of DC887768 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 44/55 (80.00%), Postives = 52/55 (94.55%), Query Frame = -2
Query:  378 YGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 542
            +GD+++SKIINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:   29 FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of DC887768 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 43/55 (78.18%), Postives = 52/55 (94.55%), Query Frame = -2
Query:  378 YGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 542
            +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:   29 FGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of DC887768 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = -2
Query:  378 YGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 542
            YGD+++SKII DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:   29 YGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of DC887768 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.470e-18
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = -2
Query:  378 YGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 542
            YG+IL+SK+I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:   31 YGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of DC887768 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.226e-18
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = -2
Query:  378 YGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 542
            YG++LESKII DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:   10 YGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
BLAST of DC887768 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = -2
Query:  378 YGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 542
            +G +++SK+I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:   31 FGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
The following BLAST results are available for this feature:
BLAST of DC887768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GRP1_DAUCA1.653e-2290.91Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP1_SINAL3.683e-2287.27Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH4.810e-2285.45Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SINAL3.118e-2183.64Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP8_ARATH1.711e-1980.00Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA1.711e-1978.18Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP_HORVU4.977e-1978.18Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRPA_MAIZE2.470e-1878.18Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP1_SORBI3.226e-1880.00Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
GRP2_SORBI2.091e-1772.73Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]

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Properties
Property NameValue
Genbank descriptionDC887768 EIC Citrus sinensis cDNA clone EIC0849 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887768 ID=DC887768; Name=DC887768; organism=Citrus sinensis; type=EST; length=543bp
AGTTANNAACAGGGAGAACGAAACAACACAGGGATAACAGGAACCGATCA
AAACGACACATCATAACCCAAGGAAAATATCAAAACACGGAACGGTAACA
TTCAACTCCTAATTTATCCTACAAAACCCTAGTTCCTCCAGCTACCGCCA
TCAGAAGCACCGCTCCTTGAGTATCGGGAACCACCATCACCGCCATATCC
ACCGTCACGGCTGTAACCACCTTCACGGCGGCCACCATATCCACCGCCGC
CACCTCCGTATCCGCGGCTCCCACCGTATCCACCGCCACCACCACTTTCA
CGGCGTCCACCACCTCCATATCCACCACCGCCACGGCTTCCGTAACCGCC
ACCGCCACCGCCACCGCTTCCACGGGACTGGGCCTCGTTGACTGTTATGT
TACGGCCGTCCAGATTCTGGCCGTTCATGCCTTCGATTGCGTCCCTCATC
GACTTCTCATCGCGGAAGGTAACGAATCCAAATCCTCTGGATCTTCCAGT
CTCGCGATCGTTAATAATCTTCGATTCAAGGATATCGCCGTAA
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