DC887763

Overview
NameDC887763
Unique NameDC887763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3300 contig Csv1_Contig3300:173..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887763 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.982e-29
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = -3
Query:  221 YLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 448
            Y+RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK  AGS+  +NP NA  LP  CGV++PYKIS ST+C+ V+
Sbjct:   40 YVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          

HSP 2 Score: 38.891 bits (89), Expect = 1.982e-29
Identity = 20/43 (46.51%), Postives = 26/43 (60.47%), Query Frame = -2
Query:  435 AALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIGLLEIG 563
            A +KL   + LCM V+    A AITC QV+ +LAPCI  +  G
Sbjct:    5 AVIKLALVVALCMAVS---VAHAITCSQVSANLAPCINYVRSG 44          
BLAST of DC887763 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.698e-29
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = -3
Query:  221 YLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 448
            YL  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NA   P  CGVSIPYKIS STDCSKV+
Sbjct:   41 YLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          

HSP 2 Score: 40.0466 bits (92), Expect = 5.698e-29
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = -2
Query:  435 ALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIGLLEIG 560
            A+ ++ A V CM+V  P + +A++CGQV+ SLAPCI  L  G
Sbjct:    5 AMMVLCAGVTCMVVGAPYT-EALSCGQVSSSLAPCISYLTKG 45          
BLAST of DC887763 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.419e-29
Identity = 48/76 (63.16%), Postives = 54/76 (71.05%), Query Frame = -3
Query:  221 YLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 448
            YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   42 YLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          

HSP 2 Score: 43.8986 bits (102), Expect = 7.419e-29
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = -2
Query:  429 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVTGSLAPCIGLLEIGRP 566
            MA L  ++ LVL CM+V GP+++ A ++CG V+G +APCIG L    P
Sbjct:    1 MAGLMKLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGP 48          
BLAST of DC887763 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.660e-29
Identity = 48/76 (63.16%), Postives = 54/76 (71.05%), Query Frame = -3
Query:  221 YLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 448
            YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   42 YLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          

HSP 2 Score: 43.5134 bits (101), Expect = 9.660e-29
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = -2
Query:  429 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVTGSLAPCIGLLEIGRP 566
            MA L  +S LVL CM+V GP++  A ++CG V+G+LA CIG L    P
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGP 48          
BLAST of DC887763 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.660e-29
Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = -3
Query:  221 GGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 436
            GGP P   CC GVR+LN+AA TTPDRQ ACNCLK AAGSI  LN NNA  LP  C V+IPYKIS ST+C+ +R
Sbjct:   43 GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          

HSP 2 Score: 45.0542 bits (105), Expect = 9.660e-29
Identity = 19/44 (43.18%), Postives = 31/44 (70.45%), Query Frame = -2
Query:  435 MAALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIGLLEIG 566
            MA++K+V   ++  +V  P++  AITCG+V  +LAPC+G L+ G
Sbjct:    1 MASMKVVCVALIMCIVIAPMAESAITCGRVDTALAPCLGYLQGG 44          
BLAST of DC887763 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.132e-28
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = -3
Query:  221 YLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 448
            YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA + P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   42 YLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          

HSP 2 Score: 43.5134 bits (101), Expect = 2.132e-28
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = -2
Query:  429 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVTGSLAPCIGLLEIGRP 566
            MA L  +S LVL CM+V GP++  A ++CG V+G+LA CIG L    P
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGP 48          
BLAST of DC887763 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.157e-28
Identity = 52/76 (68.42%), Postives = 57/76 (75.00%), Query Frame = -3
Query:  221 YLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 448
            YLR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LN N A GLP  CGVS+PYKIS STDC  V+
Sbjct:   16 YLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          

HSP 2 Score: 33.113 bits (74), Expect = 6.157e-28
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = -2
Query:  435 ITCGQVTGSLAPCIGLLEIG 494
            ITCGQV+ SLAPCI  L  G
Sbjct:    1 ITCGQVSSSLAPCINYLRAG 20          
BLAST of DC887763 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 7.975e-28
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = -3
Query:  224 YLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 448
            YL+ GGP+   CC G+++LNAAA TTPDR+TACNCLK AA +I  +N   A GLP  CGV IPY IS ST+C+ V
Sbjct:   43 YLK-GGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          

HSP 2 Score: 48.1358 bits (113), Expect = 7.975e-28
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = -2
Query:  435 AALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIGLLEIG 563
            A +KL  A++LC++V  P +   ITCG V+  LAPCIG L+ G
Sbjct:    5 AVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLKGG 47          
BLAST of DC887763 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.885e-27
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = -3
Query:  221 YLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 448
            YLR+ GP+   CC GV++L  +ARTT DRQ AC CLK AAG+I  +N   A GLP  CGV+IPYKIS STDCSKV+
Sbjct:   40 YLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          

HSP 2 Score: 44.669 bits (104), Expect = 3.885e-27
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = -2
Query:  444 KLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIGLL 554
            K+   +VLCM+V  P  A+AITCGQVT +LAPC+  L
Sbjct:    6 KIACFVVLCMVVAAPC-AEAITCGQVTSNLAPCLAYL 41          
BLAST of DC887763 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.052e-27
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  221 YLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 448
            YLR  G   VP  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A GLP  CGV+IPYKIS STDC+ V+
Sbjct:   43 YLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          

HSP 2 Score: 48.521 bits (114), Expect = 5.052e-27
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = -2
Query:  444 ALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIGLL 560
            +LKL   +VLCM+V  PL+  A+T GQVT SLAPCI  L
Sbjct:    6 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYL 44          
The following BLAST results are available for this feature:
BLAST of DC887763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
NLTP_PYRCO1.982e-2959.21Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP_HELAN5.698e-2964.47Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP2_BRANA7.419e-2963.16Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTPB_BRAOT9.660e-2963.16Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP_CICAR9.660e-2967.12Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP1_BRANA2.132e-2861.84Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
LTP1_MORNI6.157e-2868.42Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_SPIOL7.975e-2860.00Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP1_TOBAC3.885e-2761.84Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP2_GOSHI5.052e-2757.69Non-specific lipid-transfer protein OS=Gossypium h... [more]

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Properties
Property NameValue
Genbank descriptionDC887763 EIC Citrus sinensis cDNA clone EIC0843 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887763 ID=DC887763; Name=DC887763; organism=Citrus sinensis; type=EST; length=624bp
AACGTGGTGATTTCTTTAATAAACAGAATAGACACAAACTGACGATGACA
TGAAAAGCAAAGACAATAAGACACAACATGAAACGAGGGCGGGAACGAGA
CTCGCAGTACAAAGTGTAGAGAGAGACTCATAATTCGGACACAAAAATGT
CCTTATTATTATACATTTATTCTACTCCGTCAACTTAAATATGAAAATCA
ACAGCCCAGATTCCTGTTCACCGGACCTTAGAGCAGTCAGTGGAGATGCT
GATCTTGTAAGGAATGCTGACTCCACAAGCTCGTGGAAGACCAACAGCAT
TATTAGGGTTGAGGTTAGGGATTGATCCGGCGGCTTGCTTCAAGCAGTTG
CATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGGCAGCGTTGAGAGACCT
GACGCCGTTGCAGCATGGCACAGGTATAGGGCCGCCCGATCTCAAGTAAA
CCGATGCATGGTGCCAATGAGCCAGTCACCTGCCCACATGTTATGGCCTG
AGCACTCAGGGGACCAGTCACCAACATGCACAGAACCAAAGCTGAAACAA
GCTTGAGGGCAGCCATTTGAGATTTCTCCTGAGATTTTCTTTTTCNTTTT
CTTTTTTTTTTTGCCTTTGTTTAT
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