DC887762

Overview
NameDC887762
Unique NameDC887762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2553 contig Csv1_Contig2553:142..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887762 vs. ExPASy Swiss-Prot
Match: PHF5_ARATH (Uncharacterized protein At1g07170/At2g30000 OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.682e-63
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = -3
Query:  239 MAKHHXDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 568
            MAKHH DLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110          
BLAST of DC887762 vs. ExPASy Swiss-Prot
Match: PHF5A_RAT (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.925e-59
Identity = 100/110 (90.91%), Postives = 105/110 (95.45%), Query Frame = -3
Query:  239 MAKHHXDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 568
            MAKHH DLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of DC887762 vs. ExPASy Swiss-Prot
Match: PHF5A_MOUSE (PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.925e-59
Identity = 100/110 (90.91%), Postives = 105/110 (95.45%), Query Frame = -3
Query:  239 MAKHHXDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 568
            MAKHH DLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of DC887762 vs. ExPASy Swiss-Prot
Match: PHF5A_HUMAN (PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.925e-59
Identity = 100/110 (90.91%), Postives = 105/110 (95.45%), Query Frame = -3
Query:  239 MAKHHXDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 568
            MAKHH DLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of DC887762 vs. ExPASy Swiss-Prot
Match: PHF5_DROME (Uncharacterized protein CG9548 OS=Drosophila melanogaster GN=CG9548 PE=3 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.353e-57
Identity = 97/109 (88.99%), Postives = 103/109 (94.50%), Query Frame = -3
Query:  242 MAKHHXDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKK 568
            MAKHH DLI CRKQPG+AIGRLCEK DGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCK CT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFK+
Sbjct:    1 MAKHHPDLIFCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKSCTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKQ 109          
BLAST of DC887762 vs. ExPASy Swiss-Prot
Match: INI1_SCHPO (Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyces pombe GN=ini1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.749e-44
Identity = 71/105 (67.62%), Postives = 90/105 (85.71%), Query Frame = -3
Query:  254 MAKHHXDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKY 568
            M+KHH DL++CR+QPGI +G+LCE+CD KC ICDS+VRP TLVR+CDEC +GS Q RC+ICG  G+SD YYC ECT+ E DRDGCP+++NLGS++TD FYERKK+
Sbjct:    1 MSKHHPDLVLCRRQPGITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQDRCIICGAPGVSDCYYCSECTRMEYDRDGCPRVINLGSSRTDWFYERKKF 105          
BLAST of DC887762 vs. ExPASy Swiss-Prot
Match: RDS3_YEAST (Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cerevisiae GN=RDS3 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.094e-33
Identity = 61/105 (58.10%), Postives = 78/105 (74.29%), Query Frame = -3
Query:  257 MAKHHXDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICG-GVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKK 568
            M++H  DLIMC KQPG+  G LCEKCDGKC ICDSYVRP   VRVC+ C++G     C+IC   VG++DA+YC EC +  KD+DGCP+I+NLGS + D  +E+KK
Sbjct:    1 MSRHQFDLIMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLGKDKDGCPRILNLGSNRLDRHFEKKK 105          
The following BLAST results are available for this feature:
BLAST of DC887762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PHF5_ARATH1.682e-6398.18Uncharacterized protein At1g07170/At2g30000 OS=Ara... [more]
PHF5A_RAT1.925e-5990.91PHD finger-like domain-containing protein 5A OS=Ra... [more]
PHF5A_MOUSE1.925e-5990.91PHD finger-like domain-containing protein 5A OS=Mu... [more]
PHF5A_HUMAN1.925e-5990.91PHD finger-like domain-containing protein 5A OS=Ho... [more]
PHF5_DROME2.353e-5788.99Uncharacterized protein CG9548 OS=Drosophila melan... [more]
INI1_SCHPO1.749e-4467.62Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyc... [more]
RDS3_YEAST3.094e-3358.10Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cer... [more]
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Properties
Property NameValue
Genbank descriptionDC887762 EIC Citrus sinensis cDNA clone EIC0842 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887762 ID=DC887762; Name=DC887762; organism=Citrus sinensis; type=EST; length=576bp
TAAGCAGAAGTTTCCATTACAGATATGTTCAAATACAATCCGAACCCATT
AGAATATAAGCAGGTGCTTCAGTAATGAATAGAGGTTAAGATAATAAGTC
ACTCTAATGACTCATGGTTACAGATCCAACACATCTTAGTTCCGACTTCA
AACACCTCAAAATCCATCATCGTCAAGAATTGTATATAATGGTAGATAAA
ATGCTCTTGCTACAAAAACAATTAGCGGGCTACCATCATCTTTTCTTAAA
ACCATATTTCTTACGTTCGTAAAACAGGTCCGTTTTCGCACTGCCCAAAT
TGACAATTTTTGGACAACCATCCCTGTCCTTCTCTTGCTGTGTGCACTCT
TTGCAGTAGTATGCATCAGAGATTCCCACCCCTCCACAGATGACACATCG
ACCCTGAAAGGAACCATAATTGCATTCATCACAGACTCGCACAAGGGTGC
AAGGACGCACATAGGAATCACAAATCACACACTTCCCATCACATTTCTCA
CAGAGCCTTCCAATGGCTATCCCTGGTTGCTTCCTGCACATGATCAAATC
ANGATGATGCTTGGCCATGGTTTCTA
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