CN185250

Overview
NameCN185250
Unique NameCN185250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185250_ssr204 microsatellite CN185250_ssr204:204..215. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7626 contig Csv1_Contig7626:39..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185250 vs. ExPASy Swiss-Prot
Match: PAP6_ARATH (Probable plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.765e-67
Identity = 122/159 (76.73%), Postives = 141/159 (88.68%), Query Frame = 3 
Query:  249 IASLKLKLLNAVSGLNRGLAANTDDLQKADAAAKELEAVGGPVDLSVGLDRLQGKWRLLYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDILSKDFDNIAELELGVPWPLPPVEVTATLAHKFELIGSSNIKIIFEKTTVKTTGNLSQLPPLELP 725
            IA LKLKLL+ VSGLNRGL A+ DDL++A+ AAKELE  GGPVDL+  LD+LQGKWRLLYSSAFSSR+LGGSRPG PTGRL+P+TLGQVFQRID+ SKDFDNIAE+ELG PWP PP+E TATLAHKFEL+G+  IKI FEKTTVKT+GNLSQ+PP ++P
Sbjct:   84 IALLKLKLLSVVSGLNRGLVASVDDLERAEVAAKELETAGGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSKDFDNIAEVELGAPWPFPPLEATATLAHKFELLGTCKIKITFEKTTVKTSGNLSQIPPFDIP 242
The following BLAST results are available for this feature:
BLAST of CN185250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAP6_ARATH1.765e-6776.73Probable plastid-lipid-associated protein 6, chlor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185250 ID=CN185250; Name=CN185250; organism=Citrus sinensis; type=EST; length=725bp
AGTCTCTGACTCTAACCCCTCTTTCTCATTCACCAACATCCCTTTCCAGC
AACACTAGCACACAAAGAGTCACAAAAAAACTGTCTTTTCAATCTCCAAC
ACGACGTCGTTTGCTTGTTAATGGTAAAGAGTATCGAAGTAGAAGAAGAA
GCCTTGTTTTGAGGAGGTCAGCCGTCGATGACGTTCCCGTTCTTGACCCA
CCACCTCCTCCTCCTCCCGATTCTTCAGAAAGCGACAAAACTGAGTTCAT
TGCTTCTTTGAAGCTCAAGTTGCTCAATGCTGTTTCTGGGCTGAACAGAG
GTCTTGCTGCAAACACAGATGATCTGCAGAAGGCAGACGCTGCTGCAAAA
GAGCTTGAGGCTGTTGGAGGACCAGTAGACCTCTCGGTTGGTCTCGATAG
ATTACAAGGGAAATGGAGACTACTGTACAGCAGTGCATTCTCATCTCGCA
CTCTAGGTGGAAGTCGGCCTGGACCTCCCACTGGAAGGCTACTCCCCATA
ACTCTTGGCCAGGTCTTTCAACGGATTGACATATTAAGCAAAGATTTTGA
TAACATAGCAGAACTTGAATTGGGTGTTCCATGGCCCCTGCCACCAGTTG
AAGTGACTGCCACATTAGCCCATAAATTTGAACTCATAGGATCATCCAAT
ATTAAAATAATATTTGAGAAGACCACTGTAAAGACAACAGGGAACTTATC
ACAGCTTCCACCCCTTGAGTTACCT
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