DC887750

Overview
NameDC887750
Unique NameDC887750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887750_ssr199 microsatellite DC887750_ssr199:199..208. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887750 vs. ExPASy Swiss-Prot
Match: U4974_VITVI (UPF0497 membrane protein 4 OS=Vitis vinifera GN=GSVIVT00019813001 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.734e-12
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = -3 
Query:  229 VSNAIACSYAAISLLLVLADKNGNKGXXXXXXXXXXXXXXXLFSXXXXXXXXXXXGYQGNSHVQWRKVCDVFGEFCS 459
            VSNAIACSYAA+SLLL + +  GNKG               LFS           GY+GNS V+W KVC+VFG+FC+
Sbjct:   88 VSNAIACSYAALSLLLSVGNSKGNKGLGLAITVMDLVMVALLFSSNGAAGAIGLMGYEGNSRVRWGKVCNVFGKFCN 164
[Close]
BLAST of DC887750 vs. ExPASy Swiss-Prot
Match: U497B_SOYBN (UPF0497 membrane protein 11 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.335e-11
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = -3 
Query:  232 VSNAIACSYAAISLLLVLADKNGNKGXXXXXXXXXXXXXXXLFSXXXXXXXXXXXGYQGNSHVQWRKVCDVFGEFC 459
            V+NAIAC+YAA+SLLL L ++  +KG               LFS           GY+GNSHV W KVC+VFG+FC
Sbjct:   81 VTNAIACTYAAMSLLLALVNRGKSKGLWTLIAVLDTFMVALLFSGNGAAAAVGILGYKGNSHVNWNKVCNVFGKFC 156
[Close]
BLAST of DC887750 vs. ExPASy Swiss-Prot
Match: U497A_SOYBN (UPF0497 membrane protein 10 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.657e-11
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = -3 
Query:  232 VSNAIACSYAAISLLLVLADKNGNKGXXXXXXXXXXXXXXXLFSXXXXXXXXXXXGYQGNSHVQWRKVCDVFGEFC 459
            V+NAIAC+YA +SLLL L ++  +KG               LFS           GY+GNSHV W KVC+VFG+FC
Sbjct:   80 VTNAIACTYAVLSLLLALVNRGKSKGLWTLIAVLDAFMVALLFSGNGAAAAVGVLGYKGNSHVNWNKVCNVFGKFC 155
The following BLAST results are available for this feature:
BLAST of DC887750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
U4974_VITVI8.734e-1248.05UPF0497 membrane protein 4 OS=Vitis vinifera GN=GS... [more]
U497B_SOYBN4.335e-1146.05UPF0497 membrane protein 11 OS=Glycine max PE=2 SV... [more]
U497A_SOYBN9.657e-1144.74UPF0497 membrane protein 10 OS=Glycine max PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionDC887750 EIC Citrus sinensis cDNA clone EIC0828 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887750 ID=DC887750; Name=DC887750; organism=Citrus sinensis; type=EST; length=461bp
CATTCATTTTTTTGGGCAAATTCCAAAGGTTGATAGATATACAGAAACTA
GCCTCATTGTCTCGAAGTTCATAATAAGTCCAAATTAATTAGCATAAGGG
TTCCCTAAGGAACATGCAAATTATTGATTCTAGTTGGCTTTCTTGAGAAT
TCTCATTGCAGCCAAGGCAACTAGCAAGAAGAAAGCCAGTGAACCAAGGA
GAGAGAGAACAACTGCGACTGCAACGTGGCTGCAAAATTCCCCAAAAACG
TCGCACACCTTTCTCCATTGCACATGCGAATTCCCCTGGTAGCCCACGAG
GCCGACGGCACCAGCGGCGCCGTTGGCCGAAAAGAGCAGCGCTACCATTG
CTAGGTCAAGAAGAAGGATCAACATAGCCAAGCCCTTGTTTCCATTCTTG
TCAGCCAACACAAGGAGTAGAGAGATTGCTGCGTATGAGCATGCTATGGC
ATTTGACACCA
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