DC887749

Overview
NameDC887749
Unique NameDC887749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7065 contig Csv1_Contig7065:304..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887749 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.135e-21
Identity = 47/52 (90.38%), Postives = 52/52 (100.00%), Query Frame = -3
Query:  229 STGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 384
            S+GFGLIYD+V+SAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:   71 SSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122          
BLAST of DC887749 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.045e-20
Identity = 45/52 (86.54%), Postives = 52/52 (100.00%), Query Frame = -3
Query:  229 STGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 384
            S+G+GLIYD+V++AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:   71 SSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122          
BLAST of DC887749 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = -3
Query:  232 STGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 384
            STGF LIYD++D AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct:   70 STGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 120          
BLAST of DC887749 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.149e-13
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = -3
Query:  232 STGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 384
            +TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:   69 TTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of DC887749 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.149e-13
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = -3
Query:  232 STGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 384
            +TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:   69 TTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of DC887749 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.149e-13
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = -3
Query:  232 STGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 384
            +TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:   69 TTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of DC887749 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.149e-13
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = -3
Query:  232 STGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 384
            +TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:   69 TTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of DC887749 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.149e-13
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = -3
Query:  232 STGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 384
            +TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:   69 TTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of DC887749 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.149e-13
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = -3
Query:  232 STGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 384
            +TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:   69 TTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of DC887749 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.149e-13
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = -3
Query:  232 STGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 384
            +TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:   69 TTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
The following BLAST results are available for this feature:
BLAST of DC887749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RS241_ARATH6.135e-2190.3840S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH3.045e-2086.5440S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_SPOFR4.708e-1368.6340S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_RAT6.149e-1368.6340S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB6.149e-1368.6340S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE6.149e-1368.6340S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU6.149e-1368.6340S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_MACFA6.149e-1368.6340S ribosomal protein S24 OS=Macaca fascicularis G... [more]
RS24_HUMAN6.149e-1368.6340S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN6.149e-1368.6340S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]

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Properties
Property NameValue
Genbank descriptionDC887749 EIC Citrus sinensis cDNA clone EIC0825 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887749 ID=DC887749; Name=DC887749; organism=Citrus sinensis; type=EST; length=386bp
TTCAATACTCAAAAATGTCTTTTGGGGAGTACTCAAAATCTGCAAATATA
ACTAAACATCCAATGGCACCAAAATCCACAACACACTAGATTTCATTTCA
GGAACTAAACCCAAAAAAAAAAAAAAGACTATTATAGAAACTCCATCACA
GAAAATTGGCTTCGAGACTACAGAAGAATCTCCAATTGCTCACTTCTTCT
TGGCAGCATCTGAGGCCTTGGTCTTCTTTACACCACGGATCTTCTTAGCC
CTGTTCTTCCTTTCCTTCATCTGCTTCCTTGACTTCTCTACCTTGGTATC
AAGTCCATTCCTGATAAGCCTGTACTTGGGCTCAAACTTCTTAGCACTGT
CAACTGAATCATAGATCAGACCAAAGCCGGTAGATT
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