DC887747
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 1.686e-52 Identity = 105/138 (76.09%), Postives = 115/138 (83.33%), Query Frame = -3 Query: 150 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 563 SS +TKGGRGKPK++KS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP AGNAARDNK NRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP+K+GKG+ +IGSASQEF Sbjct: 2 SSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 2.876e-52 Identity = 105/138 (76.09%), Postives = 114/138 (82.61%), Query Frame = -3 Query: 150 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 563 + +G+TKGGRGKPK+TKS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK + DIGSASQEF Sbjct: 5 AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 6.408e-52 Identity = 104/138 (75.36%), Postives = 114/138 (82.61%), Query Frame = -3 Query: 150 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 563 + +G+TKGGRGKPK+TKS+SRS KAGLQFPVGRIARFLK+GKYA+RVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK + DIGSASQEF Sbjct: 5 AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 1.578e-50 Identity = 104/137 (75.91%), Postives = 110/137 (80.29%), Query Frame = -3 Query: 150 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 560 S+ KGGRGK KSTKS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP AGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP+K GK + +IGSASQEF Sbjct: 2 SSSGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 7.331e-48 Identity = 102/138 (73.91%), Postives = 109/138 (78.99%), Query Frame = -3 Query: 150 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 563 SSAG GGRGK K +KS+SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP+K GK + DIGSASQEF Sbjct: 2 SSAGGG-GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 7.331e-48 Identity = 102/138 (73.91%), Postives = 109/138 (78.99%), Query Frame = -3 Query: 150 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 563 SSAG GGRGK K +KS+SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP+K GK + DIGSASQEF Sbjct: 2 SSAGGG-GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 6.862e-46 Identity = 99/137 (72.26%), Postives = 108/137 (78.83%), Query Frame = -3 Query: 150 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 560 S+ GGRGK K+TK++SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLGTVTIA GGVLPNI Q LLP+K G G+ DIGSASQEF Sbjct: 2 SSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 6.862e-46 Identity = 99/137 (72.26%), Postives = 108/137 (78.83%), Query Frame = -3 Query: 150 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 560 S+ GGRGK K+TK++SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLGTVTIA GGVLPNI Q LLP+K G G+ DIGSASQEF Sbjct: 2 SSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 3.087e-38 Identity = 83/123 (67.48%), Postives = 92/123 (74.80%), Query Frame = -3 Query: 177 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKM--GKGRE 539 G+GK K++SRS KAGLQFPVGRIAR+LK GKYA+R+GAGAP AGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLP+K GKG E Sbjct: 5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGEE 127
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 3.087e-38 Identity = 89/129 (68.99%), Postives = 94/129 (72.87%), Query Frame = -3 Query: 174 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG--KGRED 554 G T G G K+T SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLP+K G K +ED Sbjct: 5 GKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKPQED 130 The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bpback to top |