CN185201

Overview
NameCN185201
Unique NameCN185201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12988 contig Csv1_Contig12988:390..1029. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185201 vs. ExPASy Swiss-Prot
Match: GOGC4_ARATH (Golgin candidate 4 OS=Arabidopsis thaliana GN=GC4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.840e-13
Identity = 55/148 (37.16%), Postives = 67/148 (45.27%), Query Frame = -2 
Query:  205 DLMVRMLGFSDEDKQRIGMAQQXXXXXXXXXXXXXXXXXXXXXXXGS---QADANAKMASENQSFADLWVDFLLKXXXXXXXXESAENMARSKEDIHGRSQTTAETSPTAVPGFSRXXXXXXXXXXXXXXQGNFRQLEHSDSEFSTVP 639
            DLMVRMLGFS+E+KQRIG+AQQ                       G      D++  MAS+NQSFAD+WV+FLLK        ++ E   R  ED   + Q  A  S T  P +                       E SDSEFSTVP
Sbjct:  594 DLMVRMLGFSEEEKQRIGLAQQGAAGKGVVRGVLGFPGRLVGGILGGGGGSPDSHPNMASDNQSFADMWVEFLLK--------DAEERERREAEDAANKEQEKATVSSTQRPKY-----------------------EQSDSEFSTVP 710
[Close]
BLAST of CN185201 vs. ExPASy Swiss-Prot
Match: GOGC3_ARATH (Golgin candidate 3 OS=Arabidopsis thaliana GN=GC3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.204e-11
Identity = 44/102 (43.14%), Postives = 54/102 (52.94%), Query Frame = -2 
Query:  337 DLMVRMLGFSDEDKQRIGMAQQXXXXXXXXXXXXXXXXXXXXXXXGSQADANAKMASENQSFADLWVDFLLKXXXXXXXXESAENMA-RSKEDIHGRSQTTA 639
            DLMVRMLGFS+EDK+RIG A+Q                       G  A+ +A  AS+NQSFADLWVDFLLK        E+ E  A ++K+D     Q  A
Sbjct:  589 DLMVRMLGFSEEDKERIGAAKQGGGKGVVRGVLGFPGRFVGGILGGKSAELHANAASDNQSFADLWVDFLLKDAEERERREAEEAAASKAKQDSERTRQEAA 690
The following BLAST results are available for this feature:
BLAST of CN185201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GOGC4_ARATH5.840e-1337.16Golgin candidate 4 OS=Arabidopsis thaliana GN=GC4 ... [more]
GOGC3_ARATH3.204e-1143.14Golgin candidate 3 OS=Arabidopsis thaliana GN=GC3 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006P08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185201 ID=CN185201; Name=CN185201; organism=Citrus sinensis; type=EST; length=640bp
GAGGGGAACATTGCTTATTGAGATTTCAAGTATAAAAGAATTAGTCAAAC
AAGACACTTAGCTACAACATTAAAAAAGAATCTATACCTTTGATTTTTTT
TTTTTTCAATCTTTTTGAAAGGATCTATACCTTCAATTAATTACACATTT
TCAGTGATCCGGGAGTAGTCTTGAGAGGCGAGAATTGCTCTTTGATGATG
AGAGAGGAACTGTTGAGAACTCTGAATCAGAATGTTCCAACTGCCGAAAA
TTTCCTTGAGAGGACAAGGGATTAAGATTTTGGCTAGGAGATAAATTCGA
TCTTGAAAACCCAGGGACTGCAGTGGGGCTAGTCTCTGCAGTAGTTTGAC
TTCTTCCATGTATATCTTCCTTGGATCTGGCCATATTTTCAGCAGATTCT
CTCCTCTCTCTTTCTTCAGTTTCCTTAAGAAGAAAGTCAACCCATAGATC
TGCAAAGGACTGATTTTCAGATGCCATTTTTGCATTTGCATCTGCCTGAC
TTCCTCCTATGATTCCGCCAACTAGACGACCAGGTAGACCCAAAACTCCG
CGAACAACACCTTTGCCTGCACCTTGTTGAGCCATGCCTATTCTTTGCTT
GTCTTCATCAGAAAATCCTAGCATCCGGACCATAAGATCC
back to top