DC887727

Overview
NameDC887727
Unique NameDC887727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887727 vs. ExPASy Swiss-Prot
Match: ZNRF3_HUMAN (Zinc/RING finger protein 3 OS=Homo sapiens GN=ZNRF3 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = -1
Query:   45 LTQEALDCLHVEIFNSFAISS-EGE-------ASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 275
            L  +AL+ +    FNS +    EG        +S ++ DC+ICLE + DG+EL  +PC HRFH  C+DPW+     CP+CR NI+
Sbjct:  254 LAVQALEKMETRKFNSKSKGRREGSCGALDTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 338          
BLAST of DC887727 vs. ExPASy Swiss-Prot
Match: ZNRF3_MOUSE (Zinc/RING finger protein 3 OS=Mus musculus GN=Znrf3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = -1
Query:   45 LTQEALDCLHVEIFNSFAISS-EGE-------ASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIV 275
            L  +AL+ +    FNS +    EG        +S ++ DC+ICLE + DG+EL  +PC HRFH  C+DPW+     CP+CR NI+
Sbjct:  251 LAVQALEKMETRKFNSKSKGRREGSCGALDTLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 335          
BLAST of DC887727 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = -1
Query:   57 SAGWSAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHV----EIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVRSCGDCPYCR 377
            SA  S+ S+ F E+ TS   + QL Q       GL Q  +D L V    EI  S        A++   DC++CL  F++ D+L  LP C H FH +C+D W++S   CP CR
Sbjct:   74 SATASSRSNRFPEISTSDALQRQLQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCR 185          
BLAST of DC887727 vs. ExPASy Swiss-Prot
Match: RF12A_XENLA (E3 ubiquitin-protein ligase rnf12-A OS=Xenopus laevis GN=rnf12-A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = -1
Query:   30 KPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNSDK 287
            +P GLT+E +D L    F       E +A KT   CS+C+  +T+G++L  LPC H +H  C+D W+     CP CRR ++V S++
Sbjct:  542 QPRGLTKEQIDNLSTRNFG------ENDALKT---CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVASNR 618          
BLAST of DC887727 vs. ExPASy Swiss-Prot
Match: RNF12_XENTR (E3 ubiquitin-protein ligase rnf12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = -1
Query:   30 KPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNSDK 287
            +P GLT+E +D L    F       E +A KT   CS+C+  +T+G++L  LPC H +H  C+D W+     CP CRR ++V  ++
Sbjct:  559 QPRGLTKEQIDNLSTRNFG------ENDALKT---CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVAGNR 635          
BLAST of DC887727 vs. ExPASy Swiss-Prot
Match: RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 31/86 (36.05%), Postives = 50/86 (58.14%), Query Frame = -1
Query:   30 KPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNSDK 287
            +P GLT+E +D L +  F       E +A KT   CS+C+  +T+G++L  LPC H +H  C+D W+     CP CRR ++ + ++
Sbjct:  544 QPRGLTKEQIDNLAMRSFG------ENDALKT---CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGNR 620          
BLAST of DC887727 vs. ExPASy Swiss-Prot
Match: RNF12_MOUSE (E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = -1
Query:   30 LVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNSDK 308
            L +    +P GLT+E +D L +  F       E +A KT   CS+C+  +T+G++L  LPC H +H  C+D W+     CP CRR ++ + ++
Sbjct:  513 LNEDDEDQPRGLTKEQIDNLAMRSFG------ENDALKT---CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGNR 596          
BLAST of DC887727 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = -1
Query:   48 GLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVRSCGDCPYCRRNI 278
            GL Q A+D L V ++ +  IS E        DC++CL  F+D D+L  LP C H FH  C+D W+ S   CP CRR++
Sbjct:  180 GLDQTAIDALPVFLYGNVTISLE-----QPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252          
BLAST of DC887727 vs. ExPASy Swiss-Prot
Match: RF12B_XENLA (E3 ubiquitin-protein ligase rnf12-B OS=Xenopus laevis GN=rnf12-B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = -1
Query:   30 KPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVNSDK 287
            +P GLT+E +D L    +       E +A KT   CS+C+  +T+G++L  LPC H +H  C+D W+     CP CRR ++V  ++
Sbjct:  677 QPRGLTKEQIDNLSTRNYG------ENDALKT---CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAGNR 753          
BLAST of DC887727 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 36/96 (37.50%), Postives = 49/96 (51.04%), Query Frame = -1
Query:   57 ELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSICLESFTDGDELICLP-CKHRFHSDCLDPWVRSCGDCPYCR 341
            E   S T + QL Q       GL Q  +D L V ++       E + +K   DC++CL  F++ D+L  LP C H FH DC+D W+ S   CP CR
Sbjct:   97 EFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLYK------EIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCR 186          
The following BLAST results are available for this feature:
BLAST of DC887727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ZNRF3_HUMAN4.531e-1341.18Zinc/RING finger protein 3 OS=Homo sapiens GN=ZNRF... [more]
ZNRF3_MOUSE7.728e-1341.18Zinc/RING finger protein 3 OS=Mus musculus GN=Znrf... [more]
ATL5I_ARATH3.835e-1237.50RING-H2 finger protein ATL5I OS=Arabidopsis thalia... [more]
RF12A_XENLA5.009e-1238.37E3 ubiquitin-protein ligase rnf12-A OS=Xenopus lae... [more]
RNF12_XENTR1.457e-1137.21E3 ubiquitin-protein ligase rnf12 OS=Xenopus tropi... [more]
RNF12_HUMAN1.457e-1136.05E3 ubiquitin-protein ligase RLIM OS=Homo sapiens G... [more]
RNF12_MOUSE1.904e-1134.41E3 ubiquitin-protein ligase RLIM OS=Mus musculus G... [more]
ATL3I_ARATH1.904e-1142.31RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]
RF12B_XENLA3.247e-1136.05E3 ubiquitin-protein ligase rnf12-B OS=Xenopus lae... [more]
ATL1D_ARATH9.447e-1137.50RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionDC887727 EIC Citrus sinensis cDNA clone EIC0795 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887727 ID=DC887727; Name=DC887727; organism=Citrus sinensis; type=EST; length=458bp
ACTAGAATTTAAGTTGTTCCCTATACCGATTTGTCACTATTTACAACTAT
ATTTCTTCGACAATATGGGCAGTCTCCACAGCTTCGAACCCAAGGATCCA
AACAATCAGAATGGAACCTGTGCTTGCATGGCAGGCATATAAGCTCATCC
CCATCTGTGAAACTCTCTAGACATATACTGCAATCTAATGAGGTCTTTGA
TGCTTCCCCTTCGGAACTTATTGCAAAGCTGTTGAAGATTTCAACGTGCA
AACAATCCAGGGCCTCCTGAGTGAGACCAGGAGGTTTCTTCCTCTTCTGT
TGCACTAATTGCAGTCTTTCTGTTTGAGAAGTCATCAATTCGGAAAAGGG
AGAGCTTACAGCTGACCATCCTGCGGAGGTTTCAGCTGCCCAATCTCCTG
CATCAACAAGCCTCAGTTCATCACCAAAGANATTCCCCCTCTGGTTATTG
CTTGATAA
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