DC887721

Overview
NameDC887721
Unique NameDC887721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12532 contig Csv1_Contig12532:193..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.111e-58
Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L KLF ARARRRFQRGLKRKPMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   41 LVKLFHARARRRFQRGLKRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.439e-57
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L KLF ARARRRFQRGLKR+PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   39 LVKLFHARARRRFQRGLKRQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 2.229e-56
Identity = 106/113 (93.81%), Postives = 110/113 (97.35%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +LF ARARRRFQRGLKRKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   42 LVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 6.486e-56
Identity = 106/113 (93.81%), Postives = 108/113 (95.58%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L KLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   40 LVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 6.486e-56
Identity = 106/113 (93.81%), Postives = 108/113 (95.58%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L KLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   40 LVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS155_ARATH (40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.682e-52
Identity = 101/113 (89.38%), Postives = 104/113 (92.04%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L K FS+R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:   37 LVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS153_ARATH (40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 7.421e-52
Identity = 100/113 (88.50%), Postives = 104/113 (92.04%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L KLF +R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:   38 LVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS152_ARATH (40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.185e-49
Identity = 94/113 (83.19%), Postives = 103/113 (91.15%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +LF +R RRR  RGL RKPMALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIGHYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct:   40 LVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_RAT (40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 2.918e-48
Identity = 90/113 (79.65%), Postives = 104/113 (92.04%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   33 LMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_PONAB (40S ribosomal protein S15 OS=Pongo abelii GN=RPS15 PE=2 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 2.918e-48
Identity = 90/113 (79.65%), Postives = 104/113 (92.04%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   33 LMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
The following BLAST results are available for this feature:
BLAST of DC887721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_ELAOL3.111e-5897.3540S ribosomal protein S15 OS=Elaeis oleifera GN=RP... [more]
RS15_PICMA3.439e-5796.4640S ribosomal protein S15 OS=Picea mariana GN=RPS1... [more]
RS15_ORYSJ2.229e-5693.8140S ribosomal protein S15 OS=Oryza sativa subsp. j... [more]
RS154_ARATH6.486e-5693.8140S ribosomal protein S15-4 OS=Arabidopsis thalian... [more]
RS151_ARATH6.486e-5693.8140S ribosomal protein S15-1 OS=Arabidopsis thalian... [more]
RS155_ARATH5.682e-5289.3840S ribosomal protein S15-5 OS=Arabidopsis thalian... [more]
RS153_ARATH7.421e-5288.5040S ribosomal protein S15-3 OS=Arabidopsis thalian... [more]
RS152_ARATH1.185e-4983.1940S ribosomal protein S15-2 OS=Arabidopsis thalian... [more]
RS15_RAT2.918e-4879.6540S ribosomal protein S15 OS=Rattus norvegicus GN=... [more]
RS15_PONAB2.918e-4879.6540S ribosomal protein S15 OS=Pongo abelii GN=RPS15... [more]

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Properties
Property NameValue
Genbank descriptionDC887721 EIC Citrus sinensis cDNA clone EIC0785 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887721 ID=DC887721; Name=DC887721; organism=Citrus sinensis; type=EST; length=534bp
TCCCAGGTAAGGCAGGTTAAATTAATTTCCCAGAATAAGCATTACTCTTG
AGCAGAATATCCTTCAAAACTATTTTGCATCACACTCTTTCAAAAGCTTT
AATTAAAACTGAATCGACAAAAACAGGCAGGTCCAAAATCATTTTTTGGA
GGACAAAACATACCCTCCATAAGGACAGCATGCAAAATCTTCACTTCAGA
GGAATGAACCTAGAAGAGTGGGTAGCACCAATACCAGGTCTTCCGTGCTT
AACTGGCTTGTATGAGATCGAGAACTCAGCTAGATAATGTCCAATCATTT
CGGGCTTAATTTCAACTTGATTAAAGGTCTTGCCATTGTAAACACCAATT
ATACTACCGATCATTTCAGGCACAATGATCATGTTGCGAAGATGAGTCCT
AACTGGTTCAGGCTTCTCGCCGGGTGGAGCTTCCCTTTTCGCCTTGCGCA
ACTTCTTGATCAACGCCATAGGCTTCCTTTTCAACCCCCTCTGAAACCTT
CTGCGAGCACGGGCGCTAAATAGCTTGGCGAGCT
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