DC887710

Overview
NameDC887710
Unique NameDC887710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:387..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.362e-58
Identity = 111/115 (96.52%), Postives = 114/115 (99.13%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKK+HAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP NR+F
Sbjct:  103 LAKKFHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.003e-58
Identity = 112/115 (97.39%), Postives = 113/115 (98.26%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RIF
Sbjct:  102 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.011e-56
Identity = 109/115 (94.78%), Postives = 112/115 (97.39%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAK YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ+FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RIF
Sbjct:  102 LAKSYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.158e-42
Identity = 79/115 (68.70%), Postives = 101/115 (87.83%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKY AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E+++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  102 LAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.387e-42
Identity = 78/115 (67.83%), Postives = 101/115 (87.83%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKY AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ + E+++  N+ +S+NFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  103 LAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_ICTPU (60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.200e-41
Identity = 78/115 (67.83%), Postives = 100/115 (86.96%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKY AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E ++  N+ ++VNFLVSLLKKNWQNVR LY+KS+MG   R++
Sbjct:  102 LAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLNTKVDEVKSTIKFQMKKVLCLAVAVGHVRMSEDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSSMGKPQRLY 216
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.567e-41
Identity = 79/115 (68.70%), Postives = 100/115 (86.96%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKY AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K++E KAT+KFQ+KKVLC+ VAVG++ M   ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGP  +++
Sbjct:  103 LAKKYDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPPKLY 217
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.047e-41
Identity = 78/115 (67.83%), Postives = 99/115 (86.09%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAK Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K+ E K+T+KFQ+KKVLC+ VAVG++ M+  ++ QNV +S+NFLVSLLKKNWQNVR L++KS+MGP  R++
Sbjct:  103 LAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSSMGPPQRLY 217
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_RAT (60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.673e-41
Identity = 77/115 (66.96%), Postives = 100/115 (86.96%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKY AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  103 LAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_MOUSE (60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 2.673e-41
Identity = 77/115 (66.96%), Postives = 100/115 (86.96%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKY AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  103 LAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217
The following BLAST results are available for this feature:
BLAST of DC887710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
R10A3_ARATH5.362e-5896.5260S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH7.003e-5897.3960S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH1.011e-5694.7860S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
RL10A_DANRE3.158e-4268.7060S ribosomal protein L10a OS=Danio rerio GN=rpl10... [more]
RL10A_XENLA5.387e-4267.8360S ribosomal protein L10a OS=Xenopus laevis GN=rp... [more]
RL10A_ICTPU1.200e-4167.8360S ribosomal protein L10a OS=Ictalurus punctatus ... [more]
RL10A_SPOFR1.567e-4168.7060S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
R10AB_DROME2.047e-4167.8360S ribosomal protein L10a-2 OS=Drosophila melanog... [more]
RL10A_RAT2.673e-4166.9660S ribosomal protein L10a OS=Rattus norvegicus GN... [more]
RL10A_MOUSE2.673e-4166.9660S ribosomal protein L10a OS=Mus musculus GN=Rpl1... [more]

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Properties
Property NameValue
Genbank descriptionDC887710 EIC Citrus sinensis cDNA clone EIC0762 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887710 ID=DC887710; Name=DC887710; organism=Citrus sinensis; type=EST; length=541bp
CATTCACTCTCTCCACAAAAAAATTCGTACAAGTCTACCATATTATAAGA
TTACTAGTGCATTAAATTCAGAAAAGAAAAAGAAAAAGAAAAAGAAAATT
GCAGGTTGTGACCATTCAAAGAAAGACATTTTGGGTATAATAAGATCACA
CTAGGTTTTCCCTACAAAACTCCAACATAAAGCAGAATTTCTTAAAAGAT
GCGGTTTGAAGGACCCATGGTACTCTTCAGATAGAGGCACCTGACATTCT
GCCAGTTTTTCTTCAACAATGAGACAAGGAAGTTAACACTCATTTGAACA
TTCTGGAAGATCTGCTTCTCCTCCATTGAAAGGTTTCCAACAGCAACTCC
CATGCAAAGCACCTTCTTCAATTGGAACTTCACTGTTGCCTTAGTCTCGT
TGACTTTGGACTCCAGGGATTCTTGGTGAGTAACAAGGGTAGGGAACTTT
CCTGCCTTGTTGAGACCAGGACCCAACAAACGAGGAATCTGCTTGATGAC
AGACTCTGATGCCAAGAAAGCATGATATTTCTTGGCAAGTT
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