DC887705
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.882e-23 Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = -3 Query: 300 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 620 +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S A + A+ ++ F CG+IRG LSNLGI V+A++S++PAC F V I+ Sbjct: 65 MKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.882e-23 Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = -3 Query: 300 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 620 +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S A + A+ ++ F CG+IRG LSNLGI V+A++S++PAC F V I+ Sbjct: 65 MKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.686e-22 Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = -3 Query: 300 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 620 +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S A + A+ ++ F CG+IRG LSNLGI V+A++S++PAC F V I+ Sbjct: 65 MKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16 Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = -3 Query: 300 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 620 +KF+CKD W +F KQ+D+L+TNH+GT+VLQDN F L R+ A+ A + F CG++RG LS LG+ V+A ++ LPAC F V I+ Sbjct: 66 LKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQDNSFPLLVRM---------------ASGLQYLEEAPKFLAFTCGLLRGTLSTLGVKSLVTASVAALPACKFQVVIQ 157
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6A_HUMAN (Trafficking protein particle complex subunit 6A OS=Homo sapiens GN=TRAPPC6A PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16 Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = -3 Query: 303 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI 620 +KF+CKD W +F+KQ+D+L+TNH+GT+VLQDN F L P A+ A + F CG++RGAL LGI V+A ++ LP C F V I Sbjct: 66 LKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLL---------------PMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVI 156
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.446e-15 Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = -3 Query: 300 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 620 +KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F L T P E+ LA F CG++ GAL LG V+A +++LPAC F V I+ Sbjct: 66 LKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQDNSFPLLV----------TMGSGPQYLEEAPKFLA-----FTCGLLCGALHTLGFQSLVTASVASLPACKFQVVIQ 157
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: YA95_SCHPO (Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe GN=SPAC13G6.05c PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14 Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = -3 Query: 306 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVR 620 ++F+C++ W +F+K +DNLKTN RG FVL D F W ++++ E A + T + YFP G IRG + G V A NLP C F V+ Sbjct: 72 MRFLCRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTE-------------MAQITTPYFYFPSGFIRGVVYTFGYSAQVIAQCPNLPTCIFHVK 163
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TRS33_YEAST (Transport protein particle 33 kDa subunit OS=Saccharomyces cerevisiae GN=TRS33 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12 Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = -3 Query: 366 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLG 620 +KFIC+D W ++F KQIDNLKTNHRGTF L D +R + S + +N E + + P GIIRG LS+LG Sbjct: 157 MKFICRDVWKQIFGKQIDNLKTNHRGTFYLLDYDYRPIQSFSLEEDAKNEE-----------LKMIEPFLEIPVGIIRGVLSSLG 230 The following BLAST results are available for this feature:
BLAST of DC887705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DC887705 ID=DC887705; Name=DC887705; organism=Citrus sinensis; type=EST; length=622bpback to top |