DC887705

Overview
NameDC887705
Unique NameDC887705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.882e-23
Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = -3
Query:  300 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 620
            +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   65 MKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.882e-23
Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = -3
Query:  300 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 620
            +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   65 MKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.686e-22
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = -3
Query:  300 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 620
            +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   65 MKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = -3
Query:  300 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 620
            +KF+CKD W  +F KQ+D+L+TNH+GT+VLQDN F  L R+               A+       A   + F CG++RG LS LG+   V+A ++ LPAC F V I+
Sbjct:   66 LKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQDNSFPLLVRM---------------ASGLQYLEEAPKFLAFTCGLLRGTLSTLGVKSLVTASVAALPACKFQVVIQ 157          
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6A_HUMAN (Trafficking protein particle complex subunit 6A OS=Homo sapiens GN=TRAPPC6A PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = -3
Query:  303 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI 620
            +KF+CKD W  +F+KQ+D+L+TNH+GT+VLQDN F  L                P A+       A   + F CG++RGAL  LGI   V+A ++ LP C F V I
Sbjct:   66 LKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLL---------------PMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVI 156          
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.446e-15
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = -3
Query:  300 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 620
            +KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F  L           T    P    E+   LA     F CG++ GAL  LG    V+A +++LPAC F V I+
Sbjct:   66 LKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQDNSFPLLV----------TMGSGPQYLEEAPKFLA-----FTCGLLCGALHTLGFQSLVTASVASLPACKFQVVIQ 157          
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: YA95_SCHPO (Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe GN=SPAC13G6.05c PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = -3
Query:  306 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVR 620
            ++F+C++ W  +F+K +DNLKTN RG FVL D  F W ++++     E              A + T + YFP G IRG +   G    V A   NLP C F V+
Sbjct:   72 MRFLCRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTE-------------MAQITTPYFYFPSGFIRGVVYTFGYSAQVIAQCPNLPTCIFHVK 163          
BLAST of DC887705 vs. ExPASy Swiss-Prot
Match: TRS33_YEAST (Transport protein particle 33 kDa subunit OS=Saccharomyces cerevisiae GN=TRS33 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = -3
Query:  366 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLG 620
            +KFIC+D W ++F KQIDNLKTNHRGTF L D  +R +   S +   +N E             +    +  P GIIRG LS+LG
Sbjct:  157 MKFICRDVWKQIFGKQIDNLKTNHRGTFYLLDYDYRPIQSFSLEEDAKNEE-----------LKMIEPFLEIPVGIIRGVLSSLG 230          
The following BLAST results are available for this feature:
BLAST of DC887705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TPC6B_HUMAN9.882e-2348.60Trafficking protein particle complex subunit 6B OS... [more]
TPC6B_BOVIN9.882e-2348.60Trafficking protein particle complex subunit 6B OS... [more]
TPC6B_MOUSE1.686e-2248.60Trafficking protein particle complex subunit 6B OS... [more]
TPC6A_BOVIN3.079e-1641.12Trafficking protein particle complex subunit 6A OS... [more]
TPC6A_HUMAN6.860e-1641.51Trafficking protein particle complex subunit 6A OS... [more]
TPC6A_MOUSE4.446e-1540.19Trafficking protein particle complex subunit 6A OS... [more]
YA95_SCHPO4.916e-1436.19Uncharacterized protein C13G6.05c OS=Schizosacchar... [more]
TRS33_YEAST4.601e-1243.53Transport protein particle 33 kDa subunit OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionDC887705 EIC Citrus sinensis cDNA clone EIC0755 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887705 ID=DC887705; Name=DC887705; organism=Citrus sinensis; type=EST; length=622bp
AAAATTTGACAATGAAGAGGTGGGGTGAGGATGAAACCATTGAATAGTCT
GCTTTTACAATGGATGTTAAGAGAGGACCAAGAAAATGGCTCTTCAGTAA
TCACTTATCACAATTTCAAAGTATCTGTATCCATAATCTGAAATCTACAA
AGCAACAGGAGTTCATCCCAAGCGCTCATATGGTACTTTCGGTATTTTCA
ACAATAGGGCATTAATAGTTTTCCAGTACAGATCTGTCAAAACTAGCCAT
ATGCTTCAACCCCATTCTTAATCACAGTCTGCCAAAATGCTTATCAGGCC
TTTATACGGACCACAAATGAACATGCAGGAAGATTGGATATGTCGGCCGA
AACCGCACAAGGAATCCCCAAGTTTGAGAGAGCTCCCCTTATAATTCCAC
AGGGGAAGTACACGTGCATGGTTGCTAGGGATGCCTTGCTTTCAGCTGCA
GCAGAAGGATCTTGAGATTCAGTATTTTCGACTGATGGATCAGTCGAGAT
ACGTGAAAGCCATCGAAACCGATTGTCTTGCAATACAAAGGTACCTCTAT
GGTTCGTCTTCAAGTTGTCTATCTGCTTCTTGAAGAGCTCAGACCAAAAG
TCCTTGCAGATGAACTTTATCG
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