DC887701

Overview
NameDC887701
Unique NameDC887701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887701 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 9.952e-16
Identity = 37/41 (90.24%), Postives = 41/41 (100.00%), Query Frame = -3
Query:  250 RESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 372
            RESTKQFHNSKIKFPLVFRKVRPP+RKL+TTYKA++PNLFM
Sbjct:  138 RESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178          
BLAST of DC887701 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.217e-15
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = -3
Query:  250 RESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 372
            RE TKQFHNSKIKFPLVFRKVRPP+RKL+TTYKAS+PNLFM
Sbjct:  138 REITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178          
BLAST of DC887701 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = -3
Query:  250 RESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 372
            RES+KQFHNSKIKFPLV RK+RPP+RKL+T YKASRPNLFM
Sbjct:  138 RESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178          
BLAST of DC887701 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = -3
Query:  250 RESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 372
            R++TKQFH S IKFPLV+RKVRPPTRKL+TT+KASRPNLFM
Sbjct:  138 RDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178          
The following BLAST results are available for this feature:
BLAST of DC887701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
R18A2_ARATH9.952e-1690.2460S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH2.217e-1590.2460S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_CASSA4.181e-1485.3760S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
RL18A_ORYSJ5.461e-1482.9360S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
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Properties
Property NameValue
Genbank descriptionDC887701 EIC Citrus sinensis cDNA clone EIC0750 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887701 ID=DC887701; Name=DC887701; organism=Citrus sinensis; type=EST; length=374bp
CCNAACTTCTTTTCTTCTTTTTACTTTTTTTTTTTAAAAAAAAAAAGATA
ATATATCAAAAACACCAAGTTCAACAAGCTCTTCATCAATGAACCAAATC
AAACAATCATCAAAATTTGAAAGATTGATTTTGCGGAATGTTTGGGCTCA
CATGTAAGGTAAAATTTGTCTTGCCTGCTCTCTGCATAACAAACCAGTCA
AAACAACCAGGCTTTCAGATGACAAAACCAGCAGGCAATAAGCCGGTTAC
ATGAACAAGTTAGGCCTGGATGCCTTGTATGTCGTCCTGAGCTTCCTTGT
TGGGGGCCTCACCTTCCGGAACACCAAGGGGAATTTGATTTTGGAGTTGT
GGAACTGCTTGGTGCTCTCCCTCT
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