DC887700

Overview
NameDC887700
Unique NameDC887700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11573 contig Csv1_Contig11573:83..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_ARATH (10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 6.660e-38
Identity = 71/97 (73.20%), Postives = 86/97 (88.66%), Query Frame = -3
Query:   95 MAKRLIPTLNRVLVEKIVPPSKTNAGILLPEKSSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 385
            M KRLIPT NR+LV++++ P+KT +GILLPEKSSKLNSGKVIAVGPG+RDK+G  IPV+ KEGDTVLLP YGG  VKLGE +YHL+RDE++LGTLH+
Sbjct:    1 MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSVKEGDTVLLPEYGGTQVKLGENEYHLFRDEDVLGTLHE 97          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_BRANA (10 kDa chaperonin OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.136e-37
Identity = 71/97 (73.20%), Postives = 86/97 (88.66%), Query Frame = -3
Query:   95 MAKRLIPTLNRVLVEKIVPPSKTNAGILLPEKSSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 385
            M KRLIPT NR+LV+ ++ P+KT +GILLPEK+SKLNSGKVIAVGPG+RDK+G  IPV+ KEGDTVLLP YGG  VKLGEK+YHL+RDE++LGTLH+
Sbjct:    1 MMKRLIPTFNRILVQGVIQPAKTESGILLPEKASKLNSGKVIAVGPGSRDKDGKLIPVSVKEGDTVLLPEYGGTQVKLGEKEYHLFRDEDVLGTLHE 97          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_SCHPO (10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe GN=hsp10 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = -3
Query:   95 AKRLIPTLNRVLVEKIVPPSKTNAGILLPEKS-SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 382
            AK ++P L+R+LV++I   +KT +GI LPEKS  KL+ G+VI+VG G  +KEG     +   GD VLLP YGG ++K+GE++Y LYRD E+L  + +
Sbjct:    8 AKSIVPLLDRILVQRIKADTKTASGIFLPEKSVEKLSEGRVISVGKGGYNKEGKLAQPSVAVGDRVLLPAYGGSNIKVGEEEYSLYRDHELLAIIKE 104          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_ORYLA (10 kDa heat shock protein, mitochondrial OS=Oryzias latipes GN=hspe1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.655e-18
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = -3
Query:   95 KRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 379
            ++ +P  +RVLVE+++  + T  GI+LPEKS  K+    V+AVGPG+ +++G   P++ K G+ VLLP YGG  V L +KDY L+RD +ILG   D
Sbjct:    4 RKFLPLFDRVLVERLMAETVTKGGIMLPEKSQGKVLQATVVAVGPGSMNQKGEVQPMSVKVGEKVLLPQYGGTKVVLEDKDYFLFRDADILGKYVD 99          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_MOUSE (10 kDa heat shock protein, mitochondrial OS=Mus musculus GN=Hspe1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.306e-17
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = -3
Query:   95 KRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 379
            ++ +P  +RVLVE+    + T  GI+LPEKS  K+    V+AVG G + K G   PV+ K GD VLLP YGG  V L +KDY L+RD +ILG   D
Sbjct:    7 RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKSGEIEPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDSDILGKYVD 102          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_HUMAN (10 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPE1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.909e-17
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = -3
Query:   95 KRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 379
            ++ +P  +RVLVE+    + T  GI+LPEKS  K+    V+AVG G++ K G   PV+ K GD VLLP YGG  V L +KDY L+RD +ILG   D
Sbjct:    7 RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_BOVIN (10 kDa heat shock protein, mitochondrial OS=Bos taurus GN=HSPE1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.909e-17
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = -3
Query:   95 KRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 379
            ++ +P  +RVLVE+    + T  GI+LPEKS  K+    V+AVG G++ K G   PV+ K GD VLLP YGG  V L +KDY L+RD +ILG   D
Sbjct:    7 RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_RAT (10 kDa heat shock protein, mitochondrial OS=Rattus norvegicus GN=Hspe1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.799e-17
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = -3
Query:   95 KRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 379
            ++ +P  +RVLVE+    + T  GI+LPEKS  K+    V+AVG G + K G   PV+ K GD VLLP YGG  V L +KDY L+RD +ILG   D
Sbjct:    7 RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_YEAST (10 kDa heat shock protein, mitochondrial OS=Saccharomyces cerevisiae GN=HSP10 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.481e-17
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = -3
Query:  101 AKRLIPTLNRVLVEKIVPPSKTNAGILLPEKS-SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKD-YHLYRDEEILGTL 382
            AK ++P ++RVLV++I   +KT +G+ LPEK+  KLN  +V+AVGPG  D  GN +    K GD VL+P +GG  +KLG  D   L+RD EIL  +
Sbjct:    8 AKSIVPLMDRVLVQRIKAQAKTASGLYLPEKNVEKLNQAEVVAVGPGFTDANGNKVVPQVKVGDQVLIPQFGGSTIKLGNDDEVILFRDAEILAKI 103          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_SCHJA (10 kDa heat shock protein, mitochondrial OS=Schistosoma japonicum GN=SJCHGC01960 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = -3
Query:  110 KRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEIL 379
            ++  P  +RVLV++    +K+  GI+LPEK+  K+    V+A GPG ++++G  +PV    GD V LP YGG  V L + +Y L+R+ +IL
Sbjct:    7 RKFAPLFDRVLVQRFEAETKSKGGIMLPEKAKGKVLEATVVAHGPGVKNEKGEVVPVCVTVGDKVFLPEYGGTKVVLEDTEYFLFRESDIL 97          
The following BLAST results are available for this feature:
BLAST of DC887700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CH10_ARATH6.660e-3873.2010 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10... [more]
CH10_BRANA1.136e-3773.2010 kDa chaperonin OS=Brassica napus PE=3 SV=1[more]
CH10_SCHPO6.263e-2048.4510 kDa heat shock protein, mitochondrial OS=Schizo... [more]
CH10_ORYLA7.655e-1845.8310 kDa heat shock protein, mitochondrial OS=Oryzia... [more]
CH10_MOUSE1.306e-1747.9210 kDa heat shock protein, mitochondrial OS=Mus mu... [more]
CH10_HUMAN2.909e-1747.9210 kDa heat shock protein, mitochondrial OS=Homo s... [more]
CH10_BOVIN2.909e-1747.9210 kDa heat shock protein, mitochondrial OS=Bos ta... [more]
CH10_RAT3.799e-1747.9210 kDa heat shock protein, mitochondrial OS=Rattus... [more]
CH10_YEAST6.481e-1746.8810 kDa heat shock protein, mitochondrial OS=Saccha... [more]
CH10_SCHJA6.707e-1439.5610 kDa heat shock protein, mitochondrial OS=Schist... [more]

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Properties
Property NameValue
Genbank descriptionDC887700 EIC Citrus sinensis cDNA clone EIC0748 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887700 ID=DC887700; Name=DC887700; organism=Citrus sinensis; type=EST; length=450bp
ACAACATTAAATCAAATTCCTCAGACAATTAGTCTGTTACATTCGTTTTA
AAACAACCATAATTCCAACAATACCCATTCAGCTCAATGTACTAGTCATG
CAGAGTACCCAAAATTTCCTCGTCCCTATACAAATGGTAGTCTTTCTCAC
CGAGCTTGACATGATCGCCACCATAATTCGGTAGAAGAACGGTGTCACCT
TCCTTGAAGGCCACCGGAATGGTATTCCCCTCCTTGTCACGCGCACCCGG
GCCCACAGCAATCACTTTCCCAGAGTTCAGCTTGCTGGACTTTTCAGGGA
GGAGAATCCCGGCATTGGTTTTGGAAGGAGGTACGATTTTCTCGACGAGA
ACACGGTTCAAAGTTGGGATCAATCGCTTCGCCATCGCTTTGCTTTCTCT
GCAAAAATTAGGGCCTTTGGGACAGTGTTGCCACTGAAGAATGACGGGGT
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