DC887695

Overview
NameDC887695
Unique NameDC887695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5616 contig Csv1_Contig5616:1..548. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887695 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = -3
Query:  322 PNLGLPKSTIASASEDGKVIIWTVA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEW 546
            P++GLP STIAS S+DG+V IWT     G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDG+W
Sbjct:  222 PSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of DC887695 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = -3
Query:  322 PNLGLPKSTIASASEDGKVIIWTVA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEW 546
            P++GLP STIAS S+DG+V IWT     G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDG+W
Sbjct:  222 PSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of DC887695 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = -3
Query:  322 PNLGLPKSTIASASEDGKVIIWTVA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEW 546
            P++GLP STIAS S+DG+V +WT     G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDG+W
Sbjct:  222 PSIGLPTSTIASCSQDGRVFVWTCDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of DC887695 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = -3
Query:  322 PNLGLPKSTIASASEDGKVIIWTVA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEW 546
            P++GLP STIAS S+DG+V IWT      + W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDG+W
Sbjct:  222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of DC887695 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.945e-18
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  304 PNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVTAV 546
            PN+GLP S IAS S+D  VI+WT    G  W GK L  F   V+RVSWS+ GNILAV+ G+N VTLW+E VD EW+ ++ V
Sbjct:  219 PNIGLPYSKIASCSQDRSVIVWTQDENG-VWSGKPLPKFDDIVWRVSWSVIGNILAVSCGDNQVTLWKEGVDSEWKLISHV 298          
BLAST of DC887695 vs. ExPASy Swiss-Prot
Match: SEC13_MAGGR (Protein transport protein SEC13 OS=Magnaporthe grisea GN=SEC13 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = -3
Query:  304 LPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVTAV 534
            L KS IASAS+D  V IWT  +     W+ +VL +F T V+RVSWSL+GN+LAV+ G+N VTLW+E + GEW  V ++
Sbjct:  217 LQKSYIASASQDRTVRIWTSDSSNPGVWQSRVLKEFDTTVWRVSWSLSGNVLAVSSGDNKVTLWKENLKGEWACVNSL 294          
BLAST of DC887695 vs. ExPASy Swiss-Prot
Match: SEC13_YARLI (Protein transport protein SEC13 OS=Yarrowia lipolytica GN=SEC13 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.629e-15
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = -3
Query:  304 LPKSTIASASEDGKVIIWTVAREGDQ-WEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVTAV 534
            L KS IASAS+D  VI+WT  +EG+Q W+ K+L D   P  V++VSWSL+GN+LAV+ G+N VTLW+E + GEW     V
Sbjct:  219 LSKSYIASASQDKTVIVWT--QEGNQPWKKKLLQDIPFPDVVWKVSWSLSGNVLAVSGGDNKVTLWKENLTGEWESAGVV 296          
BLAST of DC887695 vs. ExPASy Swiss-Prot
Match: SEC13_NEUCR (Protein transport protein sec-13 OS=Neurospora crassa GN=sec-13 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = -3
Query:  304 LPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVTAV 534
            L KS IASAS+D  V IWT  A    +W+ KVL+ F   V+RVSWSL+GN+LA +  NN VTLW+E + GEW  V  +
Sbjct:  226 LQKSYIASASQDKTVRIWTSDAANPGEWKCKVLN-FDAAVWRVSWSLSGNVLAASSDNNKVTLWKENLKGEWENVKTI 302          
BLAST of DC887695 vs. ExPASy Swiss-Prot
Match: SEC13_CHAGB (Protein transport protein SEC13 OS=Chaetomium globosum GN=SEC13 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = -3
Query:  304 LPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVTAV 534
            L KS IASASED  V IWT       QW  KVL  F   V+RVSWSL+GN+LA + G+N VTLW+E + GEW  V ++
Sbjct:  212 LQKSYIASASEDRTVRIWTSDPANPQQWNCKVL-GFDAAVWRVSWSLSGNVLAASGGDNKVTLWKENLKGEWECVKSI 288          
BLAST of DC887695 vs. ExPASy Swiss-Prot
Match: SEC13_PICPG (Protein transport protein SEC13 OS=Pichia pastoris (strain GS115) GN=SEC13 PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = -3
Query:  304 LPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVTAV 534
            L KS IA+AS+D  V+IWT   + ++WE + L   K P   +R SWSL+GN+LA++ G+N VTLW+E + G+W     V
Sbjct:  209 LSKSYIATASQDRTVLIWTKDGKSNKWEKQPLTKEKFPDVCWRASWSLSGNVLAISGGDNKVTLWKENIQGKWESAGEV 287          
The following BLAST results are available for this feature:
BLAST of DC887695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SEC13_RAT3.545e-2057.89Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE3.545e-2057.89Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_BOVIN6.048e-2056.58Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_HUMAN2.298e-1956.58Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_DICDI1.945e-1855.56Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_MAGGR1.541e-1552.56Protein transport protein SEC13 OS=Magnaporthe gri... [more]
SEC13_YARLI2.629e-1553.75Protein transport protein SEC13 OS=Yarrowia lipoly... [more]
SEC13_NEUCR4.959e-1452.56Protein transport protein sec-13 OS=Neurospora cra... [more]
SEC13_CHAGB8.458e-1453.85Protein transport protein SEC13 OS=Chaetomium glob... [more]
SEC13_PICPG3.214e-1345.57Protein transport protein SEC13 OS=Pichia pastoris... [more]

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Properties
Property NameValue
Genbank descriptionDC887695 EIC Citrus sinensis cDNA clone EIC0743 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887695 ID=DC887695; Name=DC887695; organism=Citrus sinensis; type=EST; length=548bp
TCCTCCAGTTGAAATCCATGCTGGAAAAATGTACCGGAAGATTCCAAGCA
TACTAGTTTACAAAAATAGAACCGCCTATTGGTATTAGCAAATAGTAATA
TGAAAAAGGAGATTCTTCGTTGAAGCTAAAGTTAAGAAATTTAGGGTTCA
GATATATCCATCAATGATGCTCAGCTATGCAGTAACATAAAAAGAGTGGG
GATTGCGGTTTAGGGTCCTCAAAAGAAATTATAAAGAGGTTCTAAAATGC
AATCTTGTATTTCACGATAAAAATTTGAAAAACTTAAAAGAGTCTTACGG
CCCAACTGCAGTCACCTGTCGCCACTCCCCATCCACTGCTTCTTCCCACA
GTGTTACATTGTTGTTTCCATCAGCCACAGCCAATATGTTTCCAGTCAGT
GACCAGCTGACTCTATAAACAGGGGTCTTGAAGTCATGCAACACCTTACC
TTCCCATTGATCTCCTTCCCTGGCCACAGTCCATATAATAACTTTCCCAT
CCTCCGATGCACTTGCAATAGTAGATTTTGGAAGCCCCAAGTTGGGAG
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