DC887694

Overview
NameDC887694
Unique NameDC887694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9158 contig Csv1_Contig9158:428..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887694 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.374e-32
Identity = 64/107 (59.81%), Postives = 89/107 (83.18%), Query Frame = -2
Query:  246 DQIRIIXEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 566
            DQI+II +AR  +E+NFEK QQ++RE VKQS AN  + ED+++RAE++AKFI +QDKEMEEFV  R+ L++ H +++ A+RR++WEEEVELE+ FD EL++LMEKYS
Sbjct:  514 DQIKIIHDARTAREDNFEKTQQEQREMVKQSNANTASVEDHRVRAEKVAKFIKLQDKEMEEFVEERENLMRTHDDRIAALRRKYWEEEVELERKFDLELSKLMEKYS 620          
BLAST of DC887694 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.357e-24
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = -2
Query:  240 DQIRIIXEARDEKEENFEKLQQQEREKV---KQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTH 566
            D I+ I E RD KEENFE LQQQER KV   +Q   NP + +D + RAEE++ FI  Q+KEMEEFV  R+ LIK   +KM+ M++RH EE  +LEK FD  L QLM K+  H
Sbjct:  510 DSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRHHEEIFDLEKEFDEALEQLMYKHGLH 621          
BLAST of DC887694 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSJ (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.557e-20
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  237 DQIRIIXEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 566
            DQI  I +A +EKE  FEKL Q+ER K +QS  +  +TED + R E+I  FI  Q K++EEF A RD+LIK H EK   +++ +  +E ELEK  D  LT LM+K+   I
Sbjct:  491 DQIEKIHKATEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTSLMDKHKPDI 600          
BLAST of DC887694 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSI (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = -2
Query:  237 DQIRIIXEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 566
            DQI  I +  +EKE  FEKL Q+ER K +QS  +  +TED + R E+I  FI  Q K++EEF A RD+LIK H EK   +++ +  +E ELEK  D  LT LM+K+   I
Sbjct:  491 DQIEKIHKPTEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTALMDKHKPDI 600          
BLAST of DC887694 vs. ExPASy Swiss-Prot
Match: SGS3_MAIZE (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = -2
Query:  222 IRIIXEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAA 560
            I  I +A ++KE+ FEKL Q+ER K ++   +    +D +LR E + KFI  Q K++ EF   RD LIK H +K   +++ + + E+ELEK FDA LT LMEK+     E ++
Sbjct:  481 IEDIHKATEDKEKQFEKLLQEERSKARRFDVDSGTMKDRQLRKEYVQKFIDCQVKDVAEFEVERDELIKVHEDKKLKLKKEYMDLELELEKEFDAALTGLMEKHKPDTFEASS 593          
The following BLAST results are available for this feature:
BLAST of DC887694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SGS3_SOLLC4.374e-3259.81Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum ... [more]
SGS3_ARATH3.357e-2453.57Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidop... [more]
SGS3_ORYSJ8.557e-2047.27Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_ORYSI4.247e-1946.36Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_MAIZE1.510e-1640.71Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionDC887694 EIC Citrus sinensis cDNA clone EIC0742 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887694 ID=DC887694; Name=DC887694; organism=Citrus sinensis; type=EST; length=567bp
TATAAATTGGCGGTCCATTTTTCATATTGCTATATTCAAATGTTTATACC
TCTCTTGAGTTTGTAATTCGGAGAATATATCAAAAGAAAAGTCTTAACGG
AGAATATATCAAAAGAAAAGTCTTAAATATTCTCAGGATTGTATGATCAA
ATTCTATGCTGCTCATCAAGTTAGTATGCTATTTTTCTAACATTCCTTGC
ATCTCAGCATCAAACACTGTCAGCGGCAACCTCTGTTATATGAGTAGAGT
ACTTCTCCATCAATTGAGTCAACTCAGCATCAAATCCTTTCTCAAGTTCA
ACCTCTTCCTCCCAATGCCTCCGCCTCATTGCATCCATCTTCTCACCGTG
AAATTTTATCAGCCGGTCCCTTGCTGCCACAAACTCTTCCATTTCTTTGT
CTTGAACCGTTATGAACTTGGCAATTTCCTCTGCCCTGAGCTTGTAGTCC
TCAGTGTTTTTAGGATTAGCAATTGATTGCTTCACCTTCTCTCGTTCCTG
TTGTTGCAGCTTCTCAAAATTCTCTTCCTTTTCATCCCTTGCTTCANGAA
TTATTCTAATCTGGTCC
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