DC887694
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC887694 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 4.374e-32 Identity = 64/107 (59.81%), Postives = 89/107 (83.18%), Query Frame = -2 Query: 246 DQIRIIXEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 566 DQI+II +AR +E+NFEK QQ++RE VKQS AN + ED+++RAE++AKFI +QDKEMEEFV R+ L++ H +++ A+RR++WEEEVELE+ FD EL++LMEKYS Sbjct: 514 DQIKIIHDARTAREDNFEKTQQEQREMVKQSNANTASVEDHRVRAEKVAKFIKLQDKEMEEFVEERENLMRTHDDRIAALRRKYWEEEVELERKFDLELSKLMEKYS 620
BLAST of DC887694 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.357e-24 Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = -2 Query: 240 DQIRIIXEARDEKEENFEKLQQQEREKV---KQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTH 566 D I+ I E RD KEENFE LQQQER KV +Q NP + +D + RAEE++ FI Q+KEMEEFV R+ LIK +KM+ M++RH EE +LEK FD L QLM K+ H Sbjct: 510 DSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRHHEEIFDLEKEFDEALEQLMYKHGLH 621
BLAST of DC887694 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSJ (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 8.557e-20 Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = -2 Query: 237 DQIRIIXEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 566 DQI I +A +EKE FEKL Q+ER K +QS + +TED + R E+I FI Q K++EEF A RD+LIK H EK +++ + +E ELEK D LT LM+K+ I Sbjct: 491 DQIEKIHKATEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTSLMDKHKPDI 600
BLAST of DC887694 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSI (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19 Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = -2 Query: 237 DQIRIIXEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 566 DQI I + +EKE FEKL Q+ER K +QS + +TED + R E+I FI Q K++EEF A RD+LIK H EK +++ + +E ELEK D LT LM+K+ I Sbjct: 491 DQIEKIHKPTEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTALMDKHKPDI 600
BLAST of DC887694 vs. ExPASy Swiss-Prot
Match: SGS3_MAIZE (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16 Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = -2 Query: 222 IRIIXEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAA 560 I I +A ++KE+ FEKL Q+ER K ++ + +D +LR E + KFI Q K++ EF RD LIK H +K +++ + + E+ELEK FDA LT LMEK+ E ++ Sbjct: 481 IEDIHKATEDKEKQFEKLLQEERSKARRFDVDSGTMKDRQLRKEYVQKFIDCQVKDVAEFEVERDELIKVHEDKKLKLKKEYMDLELELEKEFDAALTGLMEKHKPDTFEASS 593 The following BLAST results are available for this feature:
BLAST of DC887694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DC887694 ID=DC887694; Name=DC887694; organism=Citrus sinensis; type=EST; length=567bpback to top |