FC921911

Overview
NameFC921911
Unique NameFC921911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1706 contig Csv1_Contig1706:378..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921911 vs. ExPASy Swiss-Prot
Match: DNJ16_ARATH (Chaperone protein dnaJ 16 OS=Arabidopsis thaliana GN=ATJ16 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 8.270e-53
Identity = 102/142 (71.83%), Postives = 120/142 (84.51%), Query Frame = -1 
Query:    2 HPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFRVI 427
            HPDK ANDPVAAD+FKEVTFSYNILSDP+KRRQ+D+AGFEAV             LGAVNT+FAALFSKLGVPIKT+VSAT+LEEALNG V+V PL+L Q +++KVEKQCAHFY+VTI+EEE  AG VCRV+SS KSKF+++
Sbjct:   48 HPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAESQELELDLSSLGAVNTVFAALFSKLGVPIKTSVSATILEEALNGRVSVDPLVLGQAVSKKVEKQCAHFYAVTISEEEVSAGLVCRVESSSKSKFKLL 189
[Close]
BLAST of FC921911 vs. ExPASy Swiss-Prot
Match: DNJ15_ARATH (Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.849e-45
Identity = 90/142 (63.38%), Postives = 111/142 (78.17%), Query Frame = -1 
Query:    2 HPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFRVI 427
            HPDKNAN+P A+++FKEV FSY+ILSDP+KRR YD AGFEA+             LG VNTMFAALFSKLGVPIKTTVSA VLEEA+NG VTVRPL +   ++ KVEKQCAHF+ VTI+E++A +G V RV S+ +SKF+++
Sbjct:   45 HPDKNANNPDASELFKEVAFSYSILSDPEKRRHYDNAGFEALDADGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTVSANVLEEAMNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTISEQQAESGVVVRVTSTAQSKFKLL 186
[Close]
BLAST of FC921911 vs. ExPASy Swiss-Prot
Match: DNJ39_ARATH (Chaperone protein dnaJ 39 OS=Arabidopsis thaliana GN=ATJ39 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.414e-44
Identity = 89/142 (62.68%), Postives = 110/142 (77.46%), Query Frame = -1 
Query:    2 HPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFRVI 427
            HPDKN +DPVAA++FKEVTF+Y +LSDP+ RR YDT G EAV             LGAVNT+FAALF+KLGV IKTTVSA +L EALNG VT  PL++ Q ++RKVEKQ AHFYSVT+TEEEA+ G +C+V SS K+KF+++
Sbjct:   51 HPDKNPDDPVAAEMFKEVTFAYEVLSDPENRRLYDTTGSEAVGPENEDLELDLSSLGAVNTIFAALFNKLGVQIKTTVSANLLGEALNGTVTTLPLMVGQVVSRKVEKQSAHFYSVTLTEEEAQDGLICKVHSSAKNKFKLL 192
The following BLAST results are available for this feature:
BLAST of FC921911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DNJ16_ARATH8.270e-5371.83Chaperone protein dnaJ 16 OS=Arabidopsis thaliana ... [more]
DNJ15_ARATH2.849e-4563.38Chaperone protein dnaJ 15 OS=Arabidopsis thaliana ... [more]
DNJ39_ARATH1.414e-4462.68Chaperone protein dnaJ 39 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC06053H01T7 RindPdigS Citrus sinensis cDNA clone C06053H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921911 ID=FC921911; Name=FC921911; organism=Citrus sinensis; type=EST; length=427bp
CAATAACTCTGAATTTGCTTTTGTCAGATGATTGCACTCGGCACACGAAC
CCTGCCCGTGCTTCCTCTTCTGTTATTGTTACAGAATAGAAATGAGCACA
TTGCTTTTCAACCTTCCTGGTTATATGTTGATCAAGCAGTAGTGGACGAA
CAGTTACCATGCCATTAAGTGCCTCCTCCAAGACAGTAGCCGATACAGTG
GTCTTGATTGGCACACCAAGTTTACTAAAAAGTGCAGCAAACATGGTGTT
CACAGCTCCCAAACTAGAAAGATCTAGCTCCAATTCTTGACTTTCTGATT
CAACAGCCTCAAAACCAGCGGTGTCATACTGTCGTCTTTTGTCAGGATCT
GACAAGATATTATAGGAAAATGTAACCTCCTTAAAAATATCAGCTGCTAC
AGGGTCGTTTGCATTCTTATCAGGATG
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