DC887654

Overview
NameDC887654
Unique NameDC887654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887654_ssr7 microsatellite DC887654_ssr7:7..18. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3731 contig Csv1_Contig3731:87..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887654 vs. ExPASy Swiss-Prot
Match: PFPB_RICCO (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Ricinus communis GN=PFP-BETA PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.793e-83
Identity = 117/142 (82.39%), Postives = 126/142 (88.73%), Query Frame = -1
Query:  193 KGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVERRHGKFKPVIKKAMVELDGTPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGDVNHTLLLELGA 618
            +G  K  FKGQSHFFGYEGRCGLPTNFD+TYCYALGY AGALLHSGKTGLISSVGNL APV EWTV GTALT+LMDVERRHGKFKPVIKKAMVEL+G PFKKF S+R+EWAL NRY+SPGPIQF GP S   +HTLLLELG+
Sbjct:  409 QGTYKAHFKGQSHFFGYEGRCGLPTNFDSTYCYALGYAAGALLHSGKTGLISSVGNLGAPVAEWTVGGTALTSLMDVERRHGKFKPVIKKAMVELEGAPFKKFASLREEWALKNRYVSPGPIQFMGPGSDAASHTLLLELGS 550          

HSP 2 Score: 78.1814 bits (191), Expect = 4.793e-83
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = -3
Query:  617 AIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQ 736
            AIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELE RKQ
Sbjct:  369 AIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRKQ 408          
BLAST of DC887654 vs. ExPASy Swiss-Prot
Match: PFPB_SOLTU (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 2.361e-82
Identity = 119/141 (84.40%), Postives = 126/141 (89.36%), Query Frame = -1
Query:  196 KGVNKGQFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVERRHGKFKPVIKKAMVELDGTPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGDVNHTLLLELG 618
            KG    QFKGQ HFFGYEGRCGLP+NFD+TYCYALGYGAG+LL SGKTGLISSVGNLAAPVEE TV GTALTALMDVERRHGKFKPVIKKAMVEL+G PFKKF S R+EWALNNRYI+PGPIQF GP +  VNHTLLLELG
Sbjct:  409 KGAYNAQFKGQFHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEELTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELG 549          

HSP 2 Score: 75.8702 bits (185), Expect = 2.361e-82
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = -3
Query:  617 AIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENRKQ 736
            AIQEQL+LERDPHGNVQVAKIETEKMLIQMVETEL+ RKQ
Sbjct:  369 AIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQ 408          
BLAST of DC887654 vs. ExPASy Swiss-Prot
Match: PFPA_SOLTU (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.825e-21
Identity = 47/152 (30.92%), Postives = 82/152 (53.95%), Query Frame = -1
Query:  202 NKGVNKGQFKGQS-----HFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVERRHGKFK-------PVIKKAMVELDGTPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGDVNHTLLLE 621
            NK + +G +KG+      HFFGY+ R  LP+ FD  Y Y LG+    +L +G  G ++++ NL  P  +W    + ++A+M V +R+G+         P +  A V+L G  ++       ++ L++ Y +PGP+QF GP +     +L++E
Sbjct:  408 NKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHILAAGLNGYMATITNLKNPANKWHCGASPISAMMTV-KRYGRGPGKASIGVPALHPATVDLRGKSYELLSQNATKFLLDDVYRNPGPLQFDGPGADAKAGSLVVE 558          

HSP 2 Score: 36.965 bits (84), Expect = 2.825e-21
Identity = 17/42 (40.48%), Postives = 31/42 (73.81%), Query Frame = -3
Query:  611 IQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENR-KQGS 733
            I++QL+L  +   + Q+++IETEK++  +VETE+  R K+G+
Sbjct:  374 IRKQLLLHPESDDSAQLSQIETEKLIAHLVETEMNKRLKEGT 415          
BLAST of DC887654 vs. ExPASy Swiss-Prot
Match: PFPA_RICCO (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis GN=PFP-ALPHA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.780e-20
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = -1
Query:  202 NKGVNKGQFKGQS-----HFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVSGTALTALMDVER------RHGKFKPVIKKAMVELDGTPFKKFVSMRDEWALNNRYISPGPIQFTGPTSGDVNHTLLLE 621
            NK + +G +KG+      HFFGY+ R  LP+ FD  Y Y LG+    +L +G  G +++  NL  PV +W      + A+M V+R           KP I  A V+L G  ++       ++ +++ Y +PGP+QF GP +     TL +E
Sbjct:  408 NKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHVLAAGLNGYMATATNLKNPVNKWRCGAAPIAAMMTVKRWAQNPGATSIGKPAIHPAAVDLKGKAYELLRLNAVKFLMDDLYRNPGPLQFEGPGADAKPITLCVE 558          

HSP 2 Score: 35.039 bits (79), Expect = 1.780e-20
Identity = 17/42 (40.48%), Postives = 30/42 (71.43%), Query Frame = -3
Query:  611 IQEQLMLERDPHGNVQVAKIETEKMLIQMVETELENR-KQGS 733
            I++QL+L  +   + Q+++IETEK+L  +VE E+  R K+G+
Sbjct:  374 IKKQLLLYPESDDSAQLSQIETEKLLAHLVEAEMNKRLKEGT 415          
The following BLAST results are available for this feature:
BLAST of DC887654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PFPB_RICCO4.793e-8382.39Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPB_SOLTU2.361e-8284.40Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPA_SOLTU2.825e-2130.92Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPA_RICCO1.780e-2032.45Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
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Properties
Property NameValue
Genbank descriptionDC887654 EIC Citrus sinensis cDNA clone EIC0683 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887654 ID=DC887654; Name=DC887654; organism=Citrus sinensis; type=EST; length=741bp
CGAAANTAATAATAATAAAATATTATCCTCATAAATCCAAACTACCGCCA
TTCGACACAGAACTATCTCATTGATATCTGAAAAAGTGTCCAAATATTAG
CATCAAATTAAAAGAGACAGAAAATGGTATCTTATAACATTTGAACTTCA
ATCTTCAATTTAAGCACACATTTAAAAACATGCTCATACTTGAGCACCGA
GTTCGAGGAGTAGTGTGTGATTAACATCACCGGATGTTGGGCCAGTGAAT
TGAATAGGACCAGGACTGATGTAGCGATTATTGAGAGCCCACTCATCTCG
CATGGATACAAACTTCTTGAATGGTGTACCATCAAGTTCCACCATCGCCT
TCTTAATCACAGGCTTGAACTTGCCATGTCTCCTCTCTACATCCATTAAT
GCAGTCAGTGCAGTTCCACTAACAGTCCATTCTTCCACTGGAGCAGCCAA
ATTTCCTACCGATGATATCAACCCAGTTTTCCCACTATGAAGCAGAGCAC
CCGCACCATAACCCAGTGCATAACAGTAGGTAGCATCAAAGTTAGTTGGC
AAACCGCATCTTCCTTCGTAACCGAAAAAGTGGGACTGCCCTTTGAATTG
GCCTTTATTTACTCCCTTGTTTCCTATTCTCCAACTCTGTCTCAACCATT
TGAATTAACATTTTCTCTGTTTCAATTTTGGCAACCTGAACATTTCCATG
TGGATCTCTTTCAAGCATCAATTGTTCTTGAATTGCTTGCG
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