DC887650

Overview
NameDC887650
Unique NameDC887650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887650 vs. ExPASy Swiss-Prot
Match: SLY1_ARATH (SEC1 family transport protein SLY1 OS=Arabidopsis thaliana GN=SLY1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.186e-25
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = -3
Query:  365 SSSGSNHXKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGLGNTVAPST 598
            SSSG +H KGPF+EAIVFMIGGGNY+EYGSLQEL +RQ  VK+VIYG TEIL G E VEQL LLG+KMGLG  VA ++
Sbjct:  545 SSSGGSHVKGPFREAIVFMIGGGNYVEYGSLQELTQRQLTVKNVIYGATEILNGGELVEQLGLLGKKMGLGGPVASTS 622          
BLAST of DC887650 vs. ExPASy Swiss-Prot
Match: SLY1_ORYSJ (SEC1 family transport protein SLY1 OS=Oryza sativa subsp. japonica GN=SLY1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.075e-18
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = -3
Query:  386 SSGSNHXKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGLG 595
            S  +   +GPF+EAIVFMIGGGNY+EY SL EL +R Q  K VIYG TEIL G EF++QL+ LGQK GLG
Sbjct:  545 SGTAGQFRGPFREAIVFMIGGGNYIEYRSLTELTQRSQTTKQVIYGATEILNGVEFIQQLSELGQKAGLG 614          
BLAST of DC887650 vs. ExPASy Swiss-Prot
Match: SCFD1_MOUSE (Sec1 family domain-containing protein 1 OS=Mus musculus GN=Scfd1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = -3
Query:  398 KGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQK 574
            K PF+EAIVF++GGGNY+EY +L +  K +Q  KH++YG +EI    +F++QL+ LGQK
Sbjct:  582 KSPFQEAIVFVVGGGNYIEYQNLVDYIKAKQG-KHILYGCSEIFNATQFIKQLSQLGQK 639          
BLAST of DC887650 vs. ExPASy Swiss-Prot
Match: SCFD1_RAT (Sec1 family domain-containing protein 1 OS=Rattus norvegicus GN=Scfd1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = -3
Query:  398 KGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQK 574
            K PF+EAIVF++GGGNY+EY +L +  K +Q  KH++YG +EI    +F++QL+ LGQK
Sbjct:  580 KSPFQEAIVFVVGGGNYIEYQNLVDYIKGKQG-KHILYGCSEIFNATQFIKQLSQLGQK 637          
BLAST of DC887650 vs. ExPASy Swiss-Prot
Match: SCFD1_HUMAN (Sec1 family domain-containing protein 1 OS=Homo sapiens GN=SCFD1 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = -3
Query:  398 KGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQK 574
            K PF+EAIVF++GGGNY+EY +L +  K +Q  KH++YG +E+    +F++QL+ LGQK
Sbjct:  585 KNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQG-KHILYGCSELFNATQFIKQLSQLGQK 642          
BLAST of DC887650 vs. ExPASy Swiss-Prot
Match: SLY1_SCHPO (Protein sly1 OS=Schizosaccharomyces pombe GN=sly1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 29/53 (54.72%), Postives = 42/53 (79.25%), Query Frame = -3
Query:  407 FKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALL 565
            F EAIV ++GGGNY+EYG+L + A+ Q P K +IYG+T+IL+  EF+E++A L
Sbjct:  586 FSEAIVCVLGGGNYLEYGNLADWAREQNPKKRIIYGSTDILSPSEFMEEMASL 638          
The following BLAST results are available for this feature:
BLAST of DC887650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SLY1_ARATH1.186e-2573.08SEC1 family transport protein SLY1 OS=Arabidopsis ... [more]
SLY1_ORYSJ1.075e-1864.29SEC1 family transport protein SLY1 OS=Oryza sativa... [more]
SCFD1_MOUSE2.836e-1152.54Sec1 family domain-containing protein 1 OS=Mus mus... [more]
SCFD1_RAT3.703e-1152.54Sec1 family domain-containing protein 1 OS=Rattus ... [more]
SCFD1_HUMAN6.317e-1150.85Sec1 family domain-containing protein 1 OS=Homo sa... [more]
SLY1_SCHPO8.250e-1154.72Protein sly1 OS=Schizosaccharomyces pombe GN=sly1 ... [more]
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Properties
Property NameValue
Genbank descriptionDC887650 EIC Citrus sinensis cDNA clone EIC0677 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887650 ID=DC887650; Name=DC887650; organism=Citrus sinensis; type=EST; length=603bp
TATTGATGTGGATAGCATTAACAAAATAATTCTCTGAGGTTAAGGTTCCA
ATTACAGTGCAAAATGAAACAGGTACATTCCAACAACAGAAGCTTACTTC
AAAGAAGATGCCTAATTGCTATTAAGCTAAAAACATTCTTCTACATTGTC
AAAAGAACGGTATGTTTTGAGTCTCACTTAAAACACTCAGGGGCCAATAT
AACCAATAAACAAGCACACACACCAACCCCATAGCGTTCCTTCACAAATA
TTCAGCTCCAAAACCTGCCTCGGCATCAATTCCCAGTGTGCCTCCTCATA
AGCATAAAATCACCAAATGAAAGTCTTACAAGAAAGAACATCTATGATAT
ATCTGTATTTAATGGGTTGATGGGGCAACAGTGTTTCCCAATCCCATCTT
CTGGCCCAACAGTGCAAGCTGCTCAACAAACTCATCTCCTGTGAGAATTT
CTGTTGTTCCGTATATAACATGCTTCACAGGCTGCTGACGCTTCGCAAGC
TCTTGCAAGCTGCCATATTCCATGTAGTTGCCACCACCAATCATGAACAC
AATAGCTTCTTTAAATGGTCCCTTCANATGGTTGCTACCGGAGCTTGACT
TGG
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