DC887636

Overview
NameDC887636
Unique NameDC887636
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11108 contig Csv1_Contig11108:256..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC887636 vs. ExPASy Swiss-Prot
Match: UBP22_ARATH (Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.336e-14
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = -3 
Query:  343 HTGKLDAGHYVTYLRLSNKWYKCDDAWITEVNENTVRAAQGYMMFYVQKMLYYKASEK 516
            H G L++GHYVTYLRL   WY+CDDAWI EV E  VR  + YM+FY Q+ +  KA ++
Sbjct:  483 HKGMLESGHYVTYLRLKGLWYRCDDAWINEVEEEVVRGCECYMLFYAQETVIQKAHKE 540
The following BLAST results are available for this feature:
BLAST of DC887636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBP22_ARATH3.336e-1455.17Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionDC887636 EIC Citrus sinensis cDNA clone EIC0654 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887636 ID=DC887636; Name=DC887636; organism=Citrus sinensis; type=EST; length=518bp
GGAAATGTTATATTAGAAATCCATTTTTAATGAATTCATGTCTTTTCCAA
ATCAATTTCCCAAATGTTCTAACGCCTCAAAAATTTAGGCTCGCTCACAC
TCCAATGGAGCATTATATAAATTACCATTTGAAAACACCTTGGGCGATTT
TGCTTGGTCTTCCATCGCTGAGTATAAGCAACTTGGAGAATTATGTATTC
ACTGTATGGTATACCTAAAAAGTAGCCGTCGCGGGCAATAAATAACACAC
GGTAACCACAACTTCCAGTAAGGCAGTCAAACTTGCTTTCTGCACGGTTT
CATCAACATACAATTCCCTTCAGCATATCATGAGGTACCCTGTTTCTCAC
TTGCTTTGTAGTAAAGCATCTTCTGCACATAGAACATCATGTACCCTTGG
GCAGCCCTCACAGTATTCTCATTAACTTCGGTGATCCAAGCATCATCACA
CTTGTACCATTTGTTACTTAACCGCAAGTAAGTCACATAGTGGCCGGCAT
CTAGTTTACCAGTGTGAG
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