DC887629

Overview
NameDC887629
Unique NameDC887629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1240 contig Csv1_Contig1240:316..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC887629 vs. ExPASy Swiss-Prot
Match: SRP09_ARATH (Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=SRP9 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.129e-34
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = -2 
Query:  132 HCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 344
            HCDGKLVLKVTDNKECLKFKTDQAQ+AKKMEKLNNIFF LMARGPDVDLSEVTGKEQME QPAKKGRGRKQ
Sbjct:   33 HCDGKLVLKVTDNKECLKFKTDQAQEAKKMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103
[Close]
BLAST of DC887629 vs. ExPASy Swiss-Prot
Match: SRP09_MAIZE (Signal recognition particle 9 kDa protein OS=Zea mays GN=SRP9 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.175e-30
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = -2 
Query:  132 HCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 344
            HC+GKLVLKVTD++ECLKFKTDQAQDAKKMEKLNNIFFALM RGPDVD+SEV+GKEQ E Q AKKGRGR+Q
Sbjct:   33 HCEGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103
The following BLAST results are available for this feature:
BLAST of DC887629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRP09_ARATH8.129e-3495.77Signal recognition particle 9 kDa protein OS=Arabi... [more]
SRP09_MAIZE4.175e-3085.92Signal recognition particle 9 kDa protein OS=Zea m... [more]
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Properties
Property NameValue
Genbank descriptionDC887629 EIC Citrus sinensis cDNA clone EIC0647 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887629 ID=DC887629; Name=DC887629; organism=Citrus sinensis; type=EST; length=345bp
ATTCTTCGTGACCGAAATAATTTCGCCAGAATTTTAGTTGGCAATGAAAT
TGCAAAAATTCTTTCAAATCAAACATCGTCTTATAACATTTGGTCAATGA
CTATTTGCCTATCTAGCAGCCGACAAAGTCACTGTTTCCTTCCCCTTCCT
TTCTTTGCTGGCTGTGCTTCCATTTGTTCTTTTCCAGTAACTTCTGACAA
GTCCACATCAGGGCCCCGGGCCATCAAAGCAAAAAATATGTTGTTCAGTT
TCTCCATCTTCTTAGCATCCTGTGCTTGGTCTGTCTTGAACTTAAGACAC
TCTTTGTTATCAGTGACTTTGAGAACCAATTTACCATCGCAATGC
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