DC887619

Overview
NameDC887619
Unique NameDC887619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12951 contig Csv1_Contig12951:321..1011. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887619 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.179e-71
Identity = 124/147 (84.35%), Postives = 137/147 (93.20%), Query Frame = -1
Query:  251 VAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 691
            V+VT AWIKGEGVKIWFLAIIYFIAGVPGAY LWYRPLYRAFRT+SA+KFGWFF+FYLLHIGFCI A+VAPPI+FKGKSLTG+L A+DV+GD+ LVGIFYFIGFG FCLE+L+SIWVIQQVYM+FRG GK AEMKREAA GAM AAL
Sbjct:  142 VSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLYRAFRTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKGKSLTGILSAIDVVGDYTLVGIFYFIGFGFFCLETLISIWVIQQVYMHFRGGGKTAEMKREAALGAMGAAL 288          
BLAST of DC887619 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 3.886e-69
Identity = 119/147 (80.95%), Postives = 136/147 (92.52%), Query Frame = -1
Query:  251 VAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 691
            +AVTTAWIKGEGV IW LA+IYFI+GVPG YVLWYRPLYRAFR++SA  FGWFFLFY+LHI FC+FA+VAPPI+FKGKSL G+LPA+DV+   ALVGIFYFIGFGLFCLES+VSIWVIQQVYMYFRGSGKA +M+R+AARGAMRAA+
Sbjct:  145 IAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLAGILPAIDVLSAQALVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGSGKADDMRRDAARGAMRAAI 291          
BLAST of DC887619 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.657e-69
Identity = 122/147 (82.99%), Postives = 133/147 (90.48%), Query Frame = -1
Query:  251 VAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 691
            VAVTTAWIKGEG  IWFLAIIYFI+GVPGAYV+WYRPLYRA RT+SA+KFGWFF  YL HI FC+FA+VAPPIIFKGKSLTG+LPA+DV+  + LVGIFYFIGFG FCLESLVSIWVIQQVYMYFRGSGKAAEMK+EA R AM AAL
Sbjct:  136 VAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGIFYFIGFGFFCLESLVSIWVIQQVYMYFRGSGKAAEMKQEATRRAMMAAL 282          
BLAST of DC887619 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.477e-68
Identity = 116/147 (78.91%), Postives = 134/147 (91.16%), Query Frame = -1
Query:  251 VAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 691
            +AVTTAWIKGEGV IW LA+IYFIAGVPG YVLWYRPLYRAFRT+SA+ FGWFFLFY+LHI FC+FA+VAPP++FKGKSL G+LPA+DV+   A+VGIFYFIGF  FCLES+VSIWVIQQVYMYFRGSGK  +M+REAARGA+RAA+
Sbjct:  143 IAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIVGIFYFIGFAFFCLESVVSIWVIQQVYMYFRGSGKQDQMRREAARGALRAAV 289          
BLAST of DC887619 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.058e-66
Identity = 118/146 (80.82%), Postives = 134/146 (91.78%), Query Frame = -1
Query:  254 VAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 691
            +A T AWIKG GV IW LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGWFFLFYL+HI FCI+++VAPP  FKGKSL G+LPA+DV+G++A+VGIFYFIGFGLFCLESL+S+ VIQQVYMYFRGSGKAAEMKREAARGAMR+A
Sbjct:  140 IATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKGKSLAGILPAIDVIGNNAIVGIFYFIGFGLFCLESLLSVVVIQQVYMYFRGSGKAAEMKREAARGAMRSA 285          
BLAST of DC887619 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.805e-66
Identity = 114/146 (78.08%), Postives = 135/146 (92.47%), Query Frame = -1
Query:  254 VAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 691
            +AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+GKSL G+LPA+D++  +ALVGIFYF+GFGLFC+ESL+SIWVIQQVYMYFRGSGKAAEMKR+A RGAMRAA
Sbjct:  160 IAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGKAAEMKRDATRGAMRAA 305          
BLAST of DC887619 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.805e-66
Identity = 114/146 (78.08%), Postives = 135/146 (92.47%), Query Frame = -1
Query:  254 VAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 691
            +AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+GKSL G+LPA+D++  +ALVGIFYF+GFGLFC+ESL+SIWVIQQVYMYFRGSGKAAEMKR+A RGAMRAA
Sbjct:  160 IAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGKAAEMKRDATRGAMRAA 305          
BLAST of DC887619 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.358e-66
Identity = 117/146 (80.14%), Postives = 133/146 (91.10%), Query Frame = -1
Query:  254 VAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 691
            +A TTAW+KGEGV IW LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGWFFLFYL+HI FC++A+VAPP  FKGKSL G+LPA+DV+G  A+VGIFYF+GFGLFCLESL+SI VIQQVYMYFRGSGKAAEMKREAARGA+ +A
Sbjct:  136 IATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFGLFCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARGALSSA 281          
BLAST of DC887619 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.697e-62
Identity = 105/146 (71.92%), Postives = 127/146 (86.99%), Query Frame = -1
Query:  254 VAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAA 691
            + VT AWIKGEG KIWFLA+IYFI G PGAY LWYRPLYRA R ESA+KFGWFFLFYL+HI FC++A+V+P I+F GKSLTG+ PA+ ++G+  +VG+FYF+GF +FCLESL+S+WVIQ+VY+YFRGSGK AEMKREAAR A RAA
Sbjct:  167 ICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSILFVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGKEAEMKREAARSAARAA 312          
BLAST of DC887619 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.061e-58
Identity = 105/147 (71.43%), Postives = 124/147 (84.35%), Query Frame = -1
Query:  251 VAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRAAL 691
            VAVT AWIKGEG  IW L+IIYF+AGVPGAYVLWYRPLYRA RT+SA+KFG FF FY+ HI FC FA+VAPP+IF+GKSLTG LPA++++  +A VGI YFIG G FC+E+L++IWVIQQVY YFRGSGKAAEMKREA +  +  AL
Sbjct:  137 VAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFCGFAAVAPPVIFQGKSLTGFLPAIELLTTNAAVGIMYFIGAGFFCIETLLNIWVIQQVYAYFRGSGKAAEMKREATKSTLMRAL 283          
The following BLAST results are available for this feature:
BLAST of DC887619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SCAM_PEA3.179e-7184.35Secretory carrier-associated membrane protein OS=P... [more]
SCAM5_ARATH3.886e-6980.95Secretory carrier-associated membrane protein 5 OS... [more]
SCAM1_ARATH8.657e-6982.99Secretory carrier-associated membrane protein 1 OS... [more]
SCAM3_ARATH1.477e-6878.91Secretory carrier-associated membrane protein 3 OS... [more]
SCAM2_ORYSJ1.058e-6680.82Secretory carrier-associated membrane protein 2 OS... [more]
SCAM1_ORYSJ1.805e-6678.08Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI1.805e-6678.08Putative secretory carrier-associated membrane pro... [more]
SCAM3_ORYSJ2.358e-6680.14Secretory carrier-associated membrane protein 3 OS... [more]
SCAM4_ORYSJ2.697e-6271.92Secretory carrier-associated membrane protein 4 OS... [more]
SCAM2_ARATH1.061e-5871.43Secretory carrier-associated membrane protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionDC887619 EIC Citrus sinensis cDNA clone EIC0636 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887619 ID=DC887619; Name=DC887619; organism=Citrus sinensis; type=EST; length=691bp
CAGAACGAATTCNTCATACATGGAAATGGTTGTAGAGAATNTCAACAAGG
CGAAGCCTATACTCTCTAGTAACCAACATATACAAAACAGAGCACTCGAA
ATAAGTCAAAAAGAAAAAGAACTGATGTTAAGCCAGGCCAGTCTCCGAAC
ATATCATCTCCGAGAGCATTTTCCATGGCTTTAAGTACATGTACAACCTA
AATCATACAGAAGGTTATCACAGTGTTCTATCCTCTACTGAAGTATATTA
TAAAGCTGCCCTCATAGCCCCTCGTGCAGCCTCACGCTTCATCTCTGCAG
CTTTACCACTTCCTCGGAAATACATGTACACTTGCTGAATAACCCAGATG
CTGACCAATGATTCCAGGCAGAATAATCCAAATCCAATGAAGTAGAATAT
CCCAACCAGTGCATGGTCACCCATAACATCCACCGCAGGCAAAACGCCAG
TGAGTGACTTTCCTTTGAAAATTATTGGAGGAGCAACTGAGGCAAATATG
CAAAAGCCAATGTGGAGCAAGTAAAACAAGAAAAACCATCCAAACTTCAT
TGCACTTTCAGTCCTGAAAGCACGATAGAGTGGACGATACCACAGCACAT
AAGCTCCTGGAACTCCTGCTATGAAGTAAATAATGGCGAGAAACCAGATT
TTTACACCTTCGCCTTTGATCCATGCTGTGGTAACAGCTAC
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